JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT37_chr17_41415547_41429585	0/0	t0004	394	3	3	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	t0005	394	3	3	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	t0006	394	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	t0007	394	1	1	0	0	0	0	copy fasta	KRT37	chr17	41415547	41429585
KRT38_chr17_41431154_41445983	0/0	t0001	1321	199	25	45	108	9	12	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0002	1320	97	3	11	66	2	15	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/1	t0003	1321	54	8	14	16	2	13	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0004	1321	28	26	2	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0005	1321	20	15	2	2	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0006	1321	17	4	2	7	3	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0007	1320	4	4	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0008	1321	3	0	2	0	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0009	1321	2	1	1	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	1/0	t0010	1321	2	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0011	1320	1	0	0	0	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0012	1321	1	0	0	0	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0013	1321	1	0	1	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0014	1321	1	0	0	1	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0015	1321	1	0	0	0	0	1	copy fasta	KRT38	chr17	41431154	41445983
KRT38_chr17_41431154_41445983	0/0	t0016	1321	1	1	0	0	0	0	copy fasta	KRT38	chr17	41431154	41445983
KRT39_chr17_40953417_40971948	0/1	t0001	277	265	18	54	158	9	25	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	t0002	278	116	52	22	20	4	18	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	t0003	278	25	9	0	14	1	1	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	t0004	278	12	12	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	t0005	278	4	4	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT39_chr17_40953417_40971948	0/0	t0006	277	1	1	0	0	0	0	copy fasta	KRT39	chr17	40953417	40971948
KRT3_chr12_52784685_52801117	1/1	t0001	433	431	93	79	202	10	45	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0002	433	10	1	4	0	4	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0003	433	6	6	0	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0004	433	3	0	1	0	2	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0005	433	2	0	2	0	0	0	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0006	433	1	0	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT3_chr12_52784685_52801117	0/0	t0007	433	1	0	0	0	0	1	copy fasta	KRT3	chr12	52784685	52801117
KRT40_chr17_40972715_40989326	0/1	t0001	536	294	23	56	174	11	29	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0002	536	142	63	21	34	5	19	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0003	536	5	2	3	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0004	536	5	5	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0005	536	2	2	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0006	536	1	1	0	0	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0007	536	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT40_chr17_40972715_40989326	0/0	t0008	536	1	0	0	1	0	0	copy fasta	KRT40	chr17	40972715	40989326
KRT4_chr12_52801549_52819116	0/0	t0001	579	401	72	71	202	16	40	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	1/1	t0002	579	60	17	11	22	2	6	copy fasta	KRT4	chr12	52801549	52819116
KRT4_chr12_52801549_52819116	0/0	t0003	579	9	9	0	0	0	0	copy fasta	KRT4	chr12	52801549	52819116
KRT5_chr12_52509575_52525394	1/1	t0001	466	347	74	63	157	16	35	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	t0002	466	58	0	1	55	0	2	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	t0003	466	41	18	12	0	2	9	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	t0004	466	8	4	4	0	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT5_chr12_52509575_52525394	0/0	t0005	466	2	0	0	2	0	0	copy fasta	KRT5	chr12	52509575	52525394
KRT6A_chr12_52482176_52498257	1/1	t0001	614	146	40	24	52	5	23	copy fasta	KRT6A	chr12	52482176	52498257