Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP5B1_chr11_65768898_65785976	0/0	t0023	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0024	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0025	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0026	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0027	4362	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0028	4344	1	0	0	0	0	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0029	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0030	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0031	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0032	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0033	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0034	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0035	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0036	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0037	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0038	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0039	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0040	4344	1	0	1	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0041	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0042	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0043	4344	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0044	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0045	4344	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5M1_chr14_57263971_57303742	0/1	t0001	10203	137	13	31	70	7	15	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0002	10203	38	18	8	11	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0003	10203	15	15	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0004	10203	7	7	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0005	10202	7	0	0	7	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0006	10203	5	4	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0007	10199	4	2	2	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0008	10203	4	0	0	4	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0009	10203	4	0	0	4	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0010	10205	4	4	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0011	10203	3	3	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0012	10203	3	1	2	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0013	10203	3	3	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0014	10203	3	0	0	3	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0015	10203	2	1	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0016	10203	2	1	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0017	10203	2	0	0	0	2	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0018	10203	2	0	0	2	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0019	10203	2	0	0	2	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0020	10203	2	0	0	2	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0021	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0022	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0023	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0024	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0025	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0026	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0027	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742