JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT6A_chr12_52482176_52498257	0/0	t0002	614	124	2	16	94	3	9	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0003	616	65	34	14	7	2	8	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0004	616	55	1	20	24	4	6	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0005	616	14	11	2	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0006	614	6	6	0	0	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0007	616	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6A_chr12_52482176_52498257	0/0	t0008	616	1	0	0	1	0	0	copy fasta	KRT6A	chr12	52482176	52498257
KRT6B_chr12_52441651_52457146	1/1	t0001	608	406	75	72	196	14	47	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	t0002	608	15	12	2	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	t0003	608	6	6	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	t0004	608	5	5	0	0	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	t0005	608	1	0	0	1	0	0	copy fasta	KRT6B	chr12	52441651	52457146
KRT6B_chr12_52441651_52457146	0/0	t0006	540	1	0	0	0	0	1	copy fasta	KRT6B	chr12	52441651	52457146
KRT6C_chr12_52463516_52478805	0/0	t0001	615	141	2	16	113	3	7	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	1/1	t0002	615	138	34	24	49	8	21	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0003	615	104	28	32	25	7	12	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0004	615	42	26	5	7	0	4	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0005	615	6	4	2	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0006	615	3	3	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0007	615	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0008	615	1	0	1	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0009	615	1	1	0	0	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT6C_chr12_52463516_52478805	0/0	t0010	615	1	0	0	1	0	0	copy fasta	KRT6C	chr12	52463516	52478805
KRT71_chr12_52538909_52558145	1/1	t0001	692	229	62	34	101	8	22	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0002	692	159	2	39	97	8	13	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0003	692	44	19	12	1	1	11	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0004	692	6	3	1	1	1	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0005	692	5	5	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0006	692	3	0	2	0	0	1	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0007	692	3	3	0	0	0	0	copy fasta	KRT71	chr12	52538909	52558145
KRT71_chr12_52538909_52558145	0/0	t0008	692	1	0	0	0	0	1	copy fasta	KRT71	chr12	52538909	52558145
KRT72_chr12_52580589_52606463	1/0	t0001	405	292	70	66	106	15	34	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/1	t0002	405	116	5	6	96	1	7	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	t0003	405	11	9	2	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	t0004	405	5	5	0	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	t0005	401	4	1	3	0	0	0	copy fasta	KRT72	chr12	52580589	52606463
KRT72_chr12_52580589_52606463	0/0	t0006	405	4	0	3	0	0	1	copy fasta	KRT72	chr12	52580589	52606463
KRT73_chr12_52602570_52623559	1/1	t0001	662	419	92	80	189	16	40	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	t0002	662	2	0	0	2	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	t0003	662	1	0	0	1	0	0	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	t0004	662	1	0	0	0	0	1	copy fasta	KRT73	chr12	52602570	52623559
KRT73_chr12_52602570_52623559	0/0	t0005	662	1	0	0	0	0	1	copy fasta	KRT73	chr12	52602570	52623559
KRT74_chr12_52560782_52578843	0/1	t0001	1254	179	49	24	85	3	17	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0002	1254	135	38	26	51	4	16	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	1/0	t0003	1254	128	8	34	63	11	11	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0004	1254	2	2	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0005	1254	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0006	1254	1	0	0	0	0	1	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0007	1254	1	1	0	0	0	0	copy fasta	KRT74	chr12	52560782	52578843
KRT74_chr12_52560782_52578843	0/0	t0008	1254	1	0	0	1	0	0	copy fasta	KRT74	chr12	52560782	52578843