JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT75_chr12_52419070_52439371	1/0	t0001	515	231	80	43	71	5	31	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/1	t0002	515	112	4	16	79	3	9	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0003	515	59	3	19	27	4	6	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0004	515	6	4	2	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0005	515	2	0	0	2	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0006	515	2	2	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0007	515	2	2	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0008	515	1	0	0	1	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT75_chr12_52419070_52439371	0/0	t0009	515	1	1	0	0	0	0	copy fasta	KRT75	chr12	52419070	52439371
KRT76_chr12_52763155_52782345	1/0	t0001	613	293	68	53	127	5	39	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/1	t0002	613	139	20	24	79	9	6	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0003	613	3	0	1	0	2	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0004	613	3	0	0	3	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0005	613	2	2	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0006	613	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0007	613	1	1	0	0	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0008	613	1	0	0	0	0	1	copy fasta	KRT76	chr12	52763155	52782345
KRT76_chr12_52763155_52782345	0/0	t0009	613	1	0	0	1	0	0	copy fasta	KRT76	chr12	52763155	52782345
KRT77_chr12_52684626_52708524	0/0	t0001	1630	151	9	21	102	9	10	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	1/0	t0002	1630	120	44	20	42	4	9	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0003	1630	43	0	9	34	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0004	1630	32	1	16	1	3	11	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/1	t0005	1630	16	0	4	1	2	8	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0006	1630	14	14	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0007	1630	8	8	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0008	1630	8	6	2	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0009	1630	7	7	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0010	1630	6	1	3	0	0	2	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0011	1630	3	3	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0012	1630	2	0	0	2	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0013	1630	2	2	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0014	1630	1	1	0	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0015	1630	1	0	0	0	0	1	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0016	1630	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0017	1630	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0018	1630	1	0	0	0	0	1	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0019	1630	1	0	1	0	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0020	1630	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT77_chr12_52684626_52708524	0/0	t0021	1630	1	0	0	1	0	0	copy fasta	KRT77	chr12	52684626	52708524
KRT78_chr12_52832807_52853994	1/0	t0001	1371	335	61	56	172	16	29	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/1	t0002	1371	31	0	9	18	0	3	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0003	1371	19	19	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0004	1371	12	4	6	0	2	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0005	1371	6	6	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0006	1371	3	0	3	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0007	1355	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0008	1371	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0009	1371	1	0	0	1	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT78_chr12_52832807_52853994	0/0	t0010	1371	1	1	0	0	0	0	copy fasta	KRT78	chr12	52832807	52853994
KRT79_chr12_52816408_52839311	1/0	t0001	516	415	94	68	197	18	37	copy fasta	KRT79	chr12	52816408	52839311