JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT79_chr12_52816408_52839311	0/1	t0002	516	27	0	10	14	0	2	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	t0003	516	1	0	0	0	0	1	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	t0004	516	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	t0005	516	1	1	0	0	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT79_chr12_52816408_52839311	0/0	t0006	516	1	0	0	1	0	0	copy fasta	KRT79	chr12	52816408	52839311
KRT7_chr12_52228243_52253921	1/1	t0001	216	439	100	79	196	18	44	copy fasta	KRT7	chr12	52228243	52253921
KRT7_chr12_52228243_52253921	0/0	t0002	216	1	0	1	0	0	0	copy fasta	KRT7	chr12	52228243	52253921
KRT80_chr12_52163996_52197014	0/0	t0001	2515	141	1	25	97	4	14	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0002	2515	79	26	15	30	3	5	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/1	t0003	2515	55	10	14	22	4	4	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0004	2515	50	21	6	17	2	4	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0005	2515	42	4	13	12	2	11	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0006	2515	6	0	1	2	0	3	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0007	2515	6	5	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0008	2515	4	0	0	4	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	1/0	t0009	2515	4	0	1	0	1	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0010	2514	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0011	2514	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0012	2515	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0013	2515	3	3	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0014	2515	3	2	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0015	2514	2	2	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0016	2514	2	2	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0017	2515	2	0	0	0	0	2	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0018	2515	2	2	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0019	2515	2	0	2	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0020	2514	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0021	2515	1	0	0	0	0	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0022	2515	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0023	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0024	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0025	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0026	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0027	2515	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0028	2515	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0029	2515	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0030	2515	1	0	0	0	0	1	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0031	2515	1	0	1	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0032	2515	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0033	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0034	2515	1	1	0	0	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT80_chr12_52163996_52197014	0/0	t0035	2515	1	0	0	1	0	0	copy fasta	KRT80	chr12	52163996	52197014
KRT81_chr12_52280913_52296534	1/0	t0001	412	295	41	49	174	7	23	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/1	t0002	412	149	47	31	40	11	19	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	t0003	412	6	6	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	t0004	412	2	2	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	t0005	412	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT81_chr12_52280913_52296534	0/0	t0006	412	1	1	0	0	0	0	copy fasta	KRT81	chr12	52280913	52296534
KRT82_chr12_52388931_52411335	0/0	t0001	1103	97	27	27	17	7	19	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0002	1103	95	23	23	28	7	14	copy fasta	KRT82	chr12	52388931	52411335