JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT82_chr12_52388931_52411335	0/1	t0003	1103	65	0	16	43	0	5	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	1/0	t0004	1103	54	7	8	30	2	6	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0005	1103	19	0	0	19	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0006	1103	15	15	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0007	1103	9	9	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0008	1103	7	5	2	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0009	1103	2	1	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0010	1103	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0011	1103	1	0	1	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0012	1103	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0013	1103	1	1	0	0	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0014	1103	1	0	0	0	0	1	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0015	1103	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT82_chr12_52388931_52411335	0/0	t0016	1103	1	0	0	1	0	0	copy fasta	KRT82	chr12	52388931	52411335
KRT83_chr12_52309301_52326398	0/1	t0001	394	159	32	27	79	7	13	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	t0002	393	136	46	23	42	7	18	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	1/0	t0003	394	123	11	28	63	3	17	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	t0004	392	4	0	0	4	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	t0005	393	3	0	2	0	1	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	t0006	394	2	0	2	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT83_chr12_52309301_52326398	0/0	t0007	394	1	1	0	0	0	0	copy fasta	KRT83	chr12	52309301	52326398
KRT84_chr12_52372812_52390652	1/1	t0001	290	279	32	56	144	11	34	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	t0002	290	139	60	26	36	6	11	copy fasta	KRT84	chr12	52372812	52390652
KRT84_chr12_52372812_52390652	0/0	t0003	290	6	2	0	0	1	3	copy fasta	KRT84	chr12	52372812	52390652
KRT85_chr12_52355006_52372481	0/0	t0001	924	151	21	35	69	9	17	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0002	924	130	53	26	30	3	18	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/1	t0003	924	113	2	22	75	5	8	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0004	924	7	7	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	1/0	t0005	924	6	1	2	0	1	1	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0006	924	2	1	1	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0007	924	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0008	924	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0009	924	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0010	924	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0011	924	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0012	924	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0013	924	1	0	0	1	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0014	924	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT85_chr12_52355006_52372481	0/0	t0015	924	1	1	0	0	0	0	copy fasta	KRT85	chr12	52355006	52372481
KRT86_chr12_52269645_52314163	0/1	t0001	787	108	7	17	72	4	7	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	1/0	t0002	787	98	1	28	51	3	14	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0003	788	60	35	10	8	3	4	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0004	789	58	20	7	16	1	14	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0005	789	57	18	13	19	4	3	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0006	787	9	6	3	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0007	787	4	0	0	4	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0008	787	3	3	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0009	789	2	0	0	2	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0010	787	2	0	2	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0011	789	2	2	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163