JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT86_chr12_52269645_52314163	0/0	t0012	789	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0013	787	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0014	788	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0015	789	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0016	787	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0017	787	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0018	789	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0019	789	1	0	0	1	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0020	787	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0021	787	1	1	0	0	0	0	copy fasta	KRT86	chr12	52269645	52314163
KRT86_chr12_52269645_52314163	0/0	t0022	787	1	0	0	0	1	0	copy fasta	KRT86	chr12	52269645	52314163
KRT8_chr12_52892191_52910076	1/0	t0001	333	247	54	39	127	7	19	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0002	333	89	20	16	29	7	17	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/1	t0003	333	14	3	4	4	0	2	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0004	333	12	0	7	0	4	1	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0005	332	10	10	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0006	333	7	7	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0007	333	2	0	2	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0008	333	2	2	0	0	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0009	332	1	0	0	1	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0010	333	1	0	0	0	0	1	copy fasta	KRT8	chr12	52892191	52910076
KRT8_chr12_52892191_52910076	0/0	t0011	333	1	0	0	1	0	0	copy fasta	KRT8	chr12	52892191	52910076
KRT9_chr17_41560836_41577059	0/0	t0001	425	293	88	68	97	10	30	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	t0002	425	6	0	0	6	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRT9_chr17_41560836_41577059	0/0	t0003	425	1	0	0	1	0	0	copy fasta	KRT9	chr17	41560836	41577059
KRTAP1-1_chr17_41035541_41046450	0/1	t0001	377	403	96	78	176	14	38	copy fasta	KRTAP1-1	chr17	41035541	41046450
KRTAP1-3_chr17_41028884_41039874	0/1	t0001	488	335	50	65	166	13	40	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0002	488	65	13	16	34	1	1	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0003	488	10	10	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0004	488	7	7	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0005	488	4	4	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0006	488	4	4	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0007	488	4	3	1	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0008	488	3	3	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0009	488	2	2	0	0	0	0	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-3_chr17_41028884_41039874	0/0	t0010	488	1	0	0	0	0	1	copy fasta	KRTAP1-3	chr17	41028884	41039874
KRTAP1-4_chr17_41024351_41035195	0/1	t0001	480	238	52	45	102	9	29	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0002	480	114	18	21	58	4	13	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0003	480	63	13	16	32	1	1	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0004	480	8	8	0	0	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0005	480	2	2	0	0	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0006	480	2	1	1	0	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0007	480	1	0	0	0	0	1	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-4_chr17_41024351_41035195	0/0	t0008	480	1	0	1	0	0	0	copy fasta	KRTAP1-4	chr17	41024351	41035195
KRTAP1-5_chr17_41021026_41032208	0/1	t0001	659	297	72	47	138	10	29	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0002	659	111	13	20	61	4	13	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0003	659	10	0	9	0	0	1	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0004	659	3	0	0	3	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0005	659	2	2	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0006	659	2	2	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208