JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRTAP1-5_chr17_41021026_41032208	0/0	t0007	659	1	0	1	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0008	659	1	0	1	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0009	659	1	0	0	0	0	1	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP1-5_chr17_41021026_41032208	0/0	t0010	659	1	1	0	0	0	0	copy fasta	KRTAP1-5	chr17	41021026	41032208
KRTAP10-10_chr21_44632356_44643455	0/1	t0001	345	246	35	49	111	13	37	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	1/0	t0002	345	149	28	25	82	2	11	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0003	345	18	15	3	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0004	345	5	4	1	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0005	345	4	4	0	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0006	345	4	4	0	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0007	345	2	0	0	2	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0008	345	2	2	0	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0009	345	2	0	2	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0010	357	1	1	0	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0011	345	1	0	0	0	1	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0012	345	1	0	1	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0013	345	1	1	0	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0014	345	1	0	0	1	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-10_chr21_44632356_44643455	0/0	t0015	345	1	0	1	0	0	0	copy fasta	KRTAP10-10	chr21	44632356	44643455
KRTAP10-11_chr21_44641414_44652650	1/1	t0001	341	414	91	79	182	14	46	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	t0002	341	4	3	1	0	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	t0003	341	2	0	0	2	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	t0004	341	1	0	0	1	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-11_chr21_44641414_44652650	0/0	t0005	341	1	0	0	1	0	0	copy fasta	KRTAP10-11	chr21	44641414	44652650
KRTAP10-12_chr21_44692172_44703044	1/1	t0001	136	444	91	86	204	12	49	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	t0002	136	1	0	0	0	0	1	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-12_chr21_44692172_44703044	0/0	t0003	136	1	1	0	0	0	0	copy fasta	KRTAP10-12	chr21	44692172	44703044
KRTAP10-1_chr21_44533981_44545195	0/1	t0001	367	270	71	50	107	13	28	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	1/0	t0002	367	164	28	22	94	5	14	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	t0003	367	1	1	0	0	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	t0004	367	1	0	0	1	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	t0005	367	1	0	0	1	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-1_chr21_44533981_44545195	0/0	t0006	367	1	0	0	1	0	0	copy fasta	KRTAP10-1	chr21	44533981	44545195
KRTAP10-2_chr21_44545357_44556505	0/1	t0001	394	214	53	43	73	10	34	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0002	394	126	17	13	83	4	9	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	1/0	t0003	382	89	13	16	49	4	6	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0004	394	7	0	7	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0005	389	5	5	0	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0006	394	5	5	0	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0007	394	4	0	0	4	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0008	375	4	0	3	1	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0009	394	2	2	0	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0010	390	1	0	0	0	0	1	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0011	394	1	0	0	1	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0012	394	1	0	1	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0013	394	1	1	0	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0014	394	1	0	1	0	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0015	382	1	0	0	1	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0016	382	1	0	0	1	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505
KRTAP10-2_chr21_44545357_44556505	0/0	t0017	382	1	0	0	1	0	0	copy fasta	KRTAP10-2	chr21	44545357	44556505