JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRTAP19-5_chr21_30496657_30507141	0/0	t0003	267	1	0	1	0	0	0	copy fasta	KRTAP19-5	chr21	30496657	30507141
KRTAP19-6_chr21_30536535_30546864	1/1	t0001	154	394	86	62	192	14	38	copy fasta	KRTAP19-6	chr21	30536535	30546864
KRTAP19-7_chr21_30555875_30566314	1/1	t0001	249	419	84	78	196	18	41	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-7_chr21_30555875_30566314	0/0	t0002	249	2	2	0	0	0	0	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-7_chr21_30555875_30566314	0/0	t0003	249	1	0	0	0	0	1	copy fasta	KRTAP19-7	chr21	30555875	30566314
KRTAP19-8_chr21_31033159_31043476	1/1	t0001	127	374	94	72	164	12	30	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP19-8_chr21_31033159_31043476	0/0	t0002	127	4	0	0	0	0	4	copy fasta	KRTAP19-8	chr21	31033159	31043476
KRTAP2-1_chr17_41041541_41052316	0/1	t0001	390	209	42	36	88	14	28	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0002	377	80	13	15	48	2	2	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0003	377	65	16	14	34	1	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0004	390	16	3	4	5	1	3	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0005	390	10	0	9	0	0	1	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0006	390	7	7	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0007	390	6	6	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0008	390	4	4	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0009	390	2	0	2	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0010	341	2	2	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0011	467	1	1	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0012	377	1	1	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0013	300	1	1	0	0	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0014	390	1	0	0	1	0	0	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0015	390	1	0	0	0	0	1	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-1_chr17_41041541_41052316	0/0	t0016	341	1	0	0	0	0	1	copy fasta	KRTAP2-1	chr17	41041541	41052316
KRTAP2-2_chr17_41049498_41060230	0/1	t0001	362	291	42	58	137	16	37	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0002	362	71	7	17	41	2	4	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0003	362	19	17	2	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0004	362	19	19	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0005	362	2	2	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0006	343	2	0	2	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0007	327	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0008	362	1	0	1	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0009	362	1	0	0	1	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0010	362	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0011	362	1	1	0	0	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0012	362	1	0	0	1	0	0	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-2_chr17_41049498_41060230	0/0	t0013	362	1	0	0	0	0	1	copy fasta	KRTAP2-2	chr17	41049498	41060230
KRTAP2-3_chr17_41054240_41065114	0/0	t0000	0	2	0	1	0	0	1	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/1	t0001	489	294	41	64	141	14	33	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0002	490	71	4	11	53	1	2	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0003	490	17	3	4	4	1	5	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0004	488	14	13	1	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0005	489	8	8	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0006	488	8	8	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0007	490	6	6	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0008	489	4	0	0	0	0	4	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0009	489	3	2	1	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0010	490	3	0	0	3	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0011	489	3	3	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0012	489	2	2	0	0	0	0	copy fasta	KRTAP2-3	chr17	41054240	41065114
KRTAP2-3_chr17_41054240_41065114	0/0	t0013	489	1	0	0	0	0	1	copy fasta	KRTAP2-3	chr17	41054240	41065114