Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABI1_chr10_26741596_26865958	0/0	t0012	2075	1	0	0	1	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0013	2075	1	0	0	1	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0014	2075	1	1	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0015	2075	1	1	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0016	2070	1	1	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0017	2070	1	0	0	1	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI2_chr2_203323394_203437169	0/1	t0001	4940	90	9	18	48	4	10	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	1/0	t0002	4939	73	13	13	38	2	6	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0003	4940	38	13	16	3	2	4	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0004	4940	23	12	2	8	0	1	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0005	4940	21	4	3	12	0	2	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0006	4940	19	15	4	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0007	4944	6	0	0	6	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0008	4937	6	0	0	6	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0009	4938	4	4	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0010	4939	4	0	0	4	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0011	4940	3	3	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0012	4940	3	0	0	3	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0013	4940	2	0	0	2	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0014	4940	2	0	0	0	0	2	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0015	4939	2	0	1	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0016	4939	2	0	0	2	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0017	4940	1	0	1	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0018	4940	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0019	4941	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0020	4940	1	0	1	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0021	4941	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0022	4939	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0023	4940	1	0	0	0	0	1	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0024	4939	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0025	4940	1	0	0	0	0	1	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0026	4940	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0027	4940	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0028	4940	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0029	4938	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0030	4940	1	0	1	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0031	4940	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0032	4938	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0033	4940	1	0	0	0	1	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0034	4939	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0035	4939	1	0	0	0	1	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0036	4939	1	0	0	0	0	1	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0037	4939	1	1	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	t0038	4939	1	0	0	1	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI3BP_chr3_100744156_100998421	0/0	t0001	1416	45	5	22	5	5	8	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/1	t0002	1424	39	6	12	11	3	6	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0003	1377	20	1	0	19	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0004	1416	20	2	1	12	0	5	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0005	1381	17	3	7	1	1	5	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	t0006	1377	14	0	0	14	0	0	copy fasta	ABI3BP	chr3	100744156	100998421