Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP5M1_chr14_57263971_57303742	0/0	t0028	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0029	10203	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0030	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0031	10203	1	0	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0032	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0033	10203	1	0	0	0	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0034	10202	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0035	10203	1	0	0	0	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0036	10203	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0037	10203	1	0	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0038	10203	1	0	0	0	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0039	10203	1	0	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0040	10203	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0041	10203	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0042	10203	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	1/0	t0043	10203	1	0	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0044	10203	1	0	0	0	1	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0045	10203	1	0	0	0	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0046	10202	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0047	10202	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0048	10205	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0049	10203	1	0	1	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0050	10205	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	t0051	10205	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5S1_chr20_3815547_3833838	1/1	t0001	4770	158	11	35	75	10	25	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0002	4775	38	2	0	36	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0003	4770	33	0	0	28	0	5	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0004	4776	25	19	2	4	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0005	4778	20	0	4	14	2	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0006	4772	16	15	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0007	4769	14	0	13	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0008	4776	13	9	3	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0009	4778	9	3	2	0	1	3	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0010	4774	6	4	1	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0011	4775	6	0	2	0	3	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0012	4770	5	3	2	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0013	4773	3	3	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0014	4779	3	0	0	3	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0015	4777	3	3	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0016	4775	3	0	0	3	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0017	4775	3	0	0	1	0	2	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0018	4774	2	2	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0019	4772	2	2	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0020	4777	2	2	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0021	4775	2	0	0	0	0	2	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0022	4774	2	0	0	2	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0023	4776	2	0	0	2	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0024	4770	2	0	0	0	0	2	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0025	4770	2	0	1	0	1	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0026	4771	2	1	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838