JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRTAP4-8_chr17_41091981_41103142	0/0	t0004	605	21	20	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0005	601	14	2	0	10	1	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0006	605	6	3	3	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0007	605	5	5	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0008	605	3	3	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0009	605	2	1	1	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0010	605	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0011	605	1	1	0	0	0	0	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-8_chr17_41091981_41103142	0/0	t0012	605	1	0	0	0	0	1	copy fasta	KRTAP4-8	chr17	41091981	41103142
KRTAP4-9_chr17_41100389_41111488	0/0	t0001	468	352	70	63	160	14	45	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0002	468	55	4	15	35	1	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0003	468	5	4	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0004	468	3	3	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0005	468	2	2	0	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0006	467	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0007	468	1	0	0	0	1	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0008	468	1	0	1	0	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0009	468	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0010	468	1	0	0	1	0	0	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP4-9_chr17_41100389_41111488	0/0	t0011	468	1	0	0	0	0	1	copy fasta	KRTAP4-9	chr17	41100389	41111488
KRTAP5-10_chr11_71560563_71571735	1/0	t0001	565	176	14	37	82	10	32	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/1	t0002	561	148	19	33	85	3	7	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0003	561	57	19	12	23	2	1	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0004	565	33	31	2	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0005	561	27	0	1	24	0	2	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0006	561	14	13	0	0	1	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0007	565	7	2	0	4	0	1	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0008	561	2	0	0	0	0	2	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0009	565	2	0	0	1	0	1	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0010	561	1	0	0	1	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-10_chr11_71560563_71571735	0/0	t0011	565	1	0	1	0	0	0	copy fasta	KRTAP5-10	chr11	71560563	71571735
KRTAP5-11_chr11_71576855_71587875	1/1	t0001	551	381	63	79	177	16	44	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0002	551	40	6	1	27	0	6	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0003	550	28	18	5	3	2	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0004	551	4	4	0	0	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0005	551	4	4	0	0	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0006	551	3	0	0	3	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0007	551	1	0	1	0	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0008	551	1	1	0	0	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0009	551	1	0	0	1	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-11_chr11_71576855_71587875	0/0	t0010	550	1	0	0	1	0	0	copy fasta	KRTAP5-11	chr11	71576855	71587875
KRTAP5-1_chr11_1579342_1590283	0/1	t0001	106	427	95	80	187	16	48	copy fasta	KRTAP5-1	chr11	1579342	1590283
KRTAP5-1_chr11_1579342_1590283	0/0	t0002	106	1	1	0	0	0	0	copy fasta	KRTAP5-1	chr11	1579342	1590283
KRTAP5-1_chr11_1579342_1590283	0/0	t0003	96	1	0	0	1	0	0	copy fasta	KRTAP5-1	chr11	1579342	1590283
KRTAP5-2_chr11_1592177_1603294	0/0	t0001	585	400	88	75	176	14	47	copy fasta	KRTAP5-2	chr11	1592177	1603294
KRTAP5-2_chr11_1592177_1603294	0/0	t0002	585	5	3	2	0	0	0	copy fasta	KRTAP5-2	chr11	1592177	1603294
KRTAP5-2_chr11_1592177_1603294	0/0	t0003	585	2	0	0	2	0	0	copy fasta	KRTAP5-2	chr11	1592177	1603294
KRTAP5-2_chr11_1592177_1603294	0/0	t0004	585	1	0	0	1	0	0	copy fasta	KRTAP5-2	chr11	1592177	1603294
KRTAP5-2_chr11_1592177_1603294	0/0	t0005	585	1	1	0	0	0	0	copy fasta	KRTAP5-2	chr11	1592177	1603294
KRTAP5-2_chr11_1592177_1603294	0/0	t0006	585	1	0	0	1	0	0	copy fasta	KRTAP5-2	chr11	1592177	1603294