JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRTAP5-8_chr11_71533025_71544209	1/1	t0001	622	436	95	82	205	12	40	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	t0002	622	2	0	0	2	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	t0003	622	1	0	0	0	0	1	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	t0004	622	1	0	0	1	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	t0005	622	1	1	0	0	0	0	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-8_chr11_71533025_71544209	0/0	t0006	622	1	0	0	0	0	1	copy fasta	KRTAP5-8	chr11	71533025	71544209
KRTAP5-9_chr11_71543420_71554608	0/1	t0001	680	167	30	31	90	5	10	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	1/0	t0002	680	166	24	33	69	10	29	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0003	680	57	23	12	20	1	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0004	680	19	14	1	3	0	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0005	680	5	5	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0006	680	3	0	0	3	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0007	680	2	2	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0008	680	1	0	0	0	0	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0009	680	1	0	0	1	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	t0010	680	1	0	1	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP6-1_chr21_30608431_30618930	1/1	t0001	285	376	82	68	166	16	42	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	t0002	285	2	2	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	t0003	285	2	2	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-2_chr21_30593590_30603902	1/1	t0001	125	438	92	74	210	16	44	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	t0002	125	3	0	0	0	0	3	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	t0003	125	1	0	0	0	0	1	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-3_chr21_30587440_30598075	1/1	t0001	304	430	87	66	209	18	48	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	t0002	301	3	0	2	1	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	t0003	304	1	1	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP7-1_chr21_30824039_30834759	1/1	t0001	458	419	86	72	201	14	44	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	t0002	458	4	4	0	0	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	t0003	458	1	0	0	1	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	t0004	458	1	1	0	0	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	t0005	458	1	1	0	0	0	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP8-1_chr21_30807697_30818274	0/1	t0001	387	185	29	40	83	5	27	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP8-1_chr21_30807697_30818274	1/0	t0002	387	112	24	21	40	11	15	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP8-1_chr21_30807697_30818274	0/0	t0003	387	100	30	7	62	0	1	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP8-1_chr21_30807697_30818274	0/0	t0004	387	9	9	0	0	0	0	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP8-1_chr21_30807697_30818274	0/0	t0005	387	1	0	0	1	0	0	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP8-1_chr21_30807697_30818274	0/0	t0006	387	1	0	0	0	0	1	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP9-2_chr17_41221648_41232652	0/1	t0001	481	421	68	80	210	16	46	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0002	8	11	11	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0003	481	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0004	481	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0005	481	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0006	481	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	t0007	481	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-3_chr17_41227449_41238454	0/1	t0001	527	396	63	74	201	13	44	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0002	527	14	0	0	14	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0003	527	11	11	0	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0004	527	9	8	1	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0005	527	2	0	0	2	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0006	527	2	1	1	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0007	527	1	1	0	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454