JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRTAP9-3_chr17_41227449_41238454	0/0	t0008	527	1	0	0	1	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0009	527	1	1	0	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0010	527	1	1	0	0	0	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-3_chr17_41227449_41238454	0/0	t0011	527	1	0	0	0	1	0	copy fasta	KRTAP9-3	chr17	41227449	41238454
KRTAP9-4_chr17_41244687_41255653	0/1	t0001	503	287	46	61	142	13	24	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0002	503	87	2	13	57	2	13	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0003	503	21	21	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0004	503	20	2	3	10	3	2	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0005	503	13	12	1	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0006	503	5	4	1	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0007	503	3	3	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0008	503	1	0	0	0	0	1	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0009	503	1	0	0	1	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0010	503	1	0	1	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0011	503	1	1	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-4_chr17_41244687_41255653	0/0	t0012	503	1	1	0	0	0	0	copy fasta	KRTAP9-4	chr17	41244687	41255653
KRTAP9-8_chr17_41232999_41244004	0/0	t0001	527	282	38	59	146	11	28	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	1/0	t0002	527	125	16	15	73	5	15	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0003	527	16	14	2	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0004	527	5	5	0	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0005	527	3	0	0	3	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0006	527	2	0	0	2	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0007	527	1	0	0	0	0	1	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-8_chr17_41232999_41244004	0/0	t0008	527	1	1	0	0	0	0	copy fasta	KRTAP9-8	chr17	41232999	41244004
KRTAP9-9_chr17_41250384_41261364	0/1	t0001	472	268	46	53	131	12	25	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	t0002	472	130	32	17	62	4	15	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	t0003	472	11	11	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	t0004	472	5	5	0	0	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTAP9-9_chr17_41250384_41261364	0/0	t0005	472	1	0	0	1	0	0	copy fasta	KRTAP9-9	chr17	41250384	41261364
KRTCAP2_chr1_155164408_155178304	1/1	t0001	113	330	94	60	112	16	46	copy fasta	KRTCAP2	chr1	155164408	155178304
KRTCAP3_chr2_27437381_27449297	1/1	t0001	150	281	77	64	88	12	38	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	t0002	150	3	3	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTCAP3_chr2_27437381_27449297	0/0	t0003	150	2	2	0	0	0	0	copy fasta	KRTCAP3	chr2	27437381	27449297
KRTDAP_chr19_35482324_35495464	1/1	t0001	127	399	87	67	196	9	38	copy fasta	KRTDAP	chr19	35482324	35495464
KRTDAP_chr19_35482324_35495464	0/0	t0002	127	30	9	11	1	5	4	copy fasta	KRTDAP	chr19	35482324	35495464
KRTDAP_chr19_35482324_35495464	0/0	t0003	127	1	0	0	1	0	0	copy fasta	KRTDAP	chr19	35482324	35495464
KSR1_chr17_27451448_27631435	0/0	t0001	3240	57	10	9	21	3	14	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0002	3240	53	13	14	19	4	3	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	1/0	t0003	3240	45	27	13	0	2	2	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0004	3240	24	2	12	4	2	4	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0005	3240	19	1	6	9	0	3	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0006	3240	10	2	3	2	2	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/1	t0007	3240	9	4	3	0	0	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0008	3240	6	6	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0009	3241	4	3	1	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0010	3240	2	0	0	2	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0011	3240	2	2	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0012	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0013	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0014	3240	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435