JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KSR1_chr17_27451448_27631435	0/0	t0015	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0016	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0017	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0018	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0019	3240	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0020	3240	1	0	0	0	1	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0021	3241	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0022	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0023	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0024	3240	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0025	3240	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	t0026	3240	1	0	1	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR2_chr12_117448012_117973990	0/0	t0001	14869	7	0	1	6	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0002	14925	7	0	3	3	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0003	14869	4	0	1	1	0	2	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0004	14925	4	1	0	3	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0005	14925	4	4	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0006	14873	3	0	2	0	1	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0007	14925	3	0	2	0	1	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0008	14937	3	0	1	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0009	14872	3	0	3	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0010	14925	2	0	2	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0011	14924	2	0	0	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0012	14869	2	0	0	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0013	14927	2	0	0	0	0	2	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0014	14870	2	0	0	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0015	14932	2	1	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0016	14939	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0017	14938	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0018	14938	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0019	15267	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0020	14924	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0021	14931	2	1	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0022	14929	2	0	0	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0023	14925	2	0	0	2	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0024	14925	2	2	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0025	14924	2	0	0	1	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0026	14938	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0027	14945	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0028	14925	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0029	14939	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0030	14941	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0031	14938	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0032	14869	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0033	14869	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0034	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0035	14928	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0036	14925	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0037	14943	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0038	14935	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990