JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KSR2_chr12_117448012_117973990	0/0	t0089	14930	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0090	14935	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0091	14924	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0092	14918	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0093	14925	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0094	14944	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0095	14869	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0096	14872	1	0	0	0	1	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0097	14945	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0098	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0099	14935	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0100	14940	1	0	0	0	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0101	14938	1	0	0	0	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0102	15265	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0103	14939	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0104	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0105	14939	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0106	14939	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0107	14926	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0108	14924	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0109	14932	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0110	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0111	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0112	14925	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0113	14929	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0114	14937	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0115	14925	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0116	14926	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0117	14932	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0118	14926	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0119	14927	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0120	14945	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0121	14924	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0122	14946	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0123	14931	1	0	0	0	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0124	14925	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0125	14933	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0126	14941	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0127	14937	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0128	14933	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0129	14927	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0130	14930	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0131	14939	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0132	14935	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0133	14933	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0134	14940	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0135	14944	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0136	14949	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0137	14946	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0138	14949	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990