Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP5S1_chr20_3815547_3833838	0/0	t0027	4770	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0028	4775	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0029	4774	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0030	4771	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0031	4771	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0032	4769	1	0	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0033	4777	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0034	4778	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0035	4777	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0036	4776	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0037	4775	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0038	4776	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0039	4778	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0040	4776	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0041	4775	1	0	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0042	4774	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0043	4774	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0044	4770	1	0	0	0	1	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0045	4770	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0046	4770	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0047	4770	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0048	4769	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0049	4770	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0050	4771	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0051	4770	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0052	4769	1	0	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0053	4770	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0054	4770	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0055	4773	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0056	4772	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0057	4771	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0058	4772	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0059	4772	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0060	4776	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0061	4777	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	t0062	4775	1	0	0	0	0	1	copy fasta	AP5S1	chr20	3815547	3833838
AP5Z1_chr7_4770623_4799397	1/1	t0001	3106	175	3	41	97	8	24	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0002	3122	35	10	3	10	0	12	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0003	3106	21	19	1	0	1	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0004	3106	14	14	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0005	3106	12	0	6	1	1	4	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0006	3106	9	9	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0007	3106	8	5	3	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0008	3106	5	0	0	3	0	2	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0009	3105	5	3	2	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0010	3106	4	1	1	1	1	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0011	3122	4	0	0	4	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0012	3105	4	0	3	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0013	3100	3	3	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0014	3106	2	0	2	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397