JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KSR2_chr12_117448012_117973990	0/0	t0139	14925	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0140	14924	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0141	14930	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0142	15266	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0143	14930	1	0	0	0	1	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0144	14923	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0145	14923	1	1	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0146	14923	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0147	14940	1	0	0	0	0	1	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0148	14938	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0149	14935	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	1/0	t0150	14923	1	0	0	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	t0151	14925	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KTI12_chr1_52027103_52038810	1/0	t0001	644	261	72	42	104	10	32	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0002	645	32	0	3	29	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/1	t0003	645	7	5	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0004	644	7	7	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0005	644	7	6	1	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0006	644	1	1	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0007	644	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0008	644	1	0	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	t0009	644	1	1	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTN1_chr14_55575207_55689579	1/1	t0001	655	190	47	42	78	4	17	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0002	649	82	5	11	48	4	14	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0003	649	29	12	9	4	1	3	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0004	658	5	0	0	5	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0005	655	4	1	0	3	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0006	640	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0007	655	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0008	655	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	t0009	667	1	0	0	0	1	0	copy fasta	KTN1	chr14	55575207	55689579
KXD1_chr19_18552870_18574378	1/1	t0001	814	327	37	69	169	12	38	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0002	814	44	37	3	0	2	2	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0003	815	10	7	3	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0004	814	5	5	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0005	814	4	3	1	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0006	814	2	2	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0007	814	2	2	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0008	815	1	0	0	1	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	t0009	814	1	1	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KYAT1_chr9_128827942_128886950	1/1	t0001	703	190	33	46	80	7	22	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	t0002	703	116	37	18	42	1	18	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	t0003	703	13	0	0	13	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	t0004	703	6	6	0	0	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	t0005	703	1	0	0	1	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT3_chr1_88930779_88997629	1/1	t0001	450	227	42	48	102	17	16	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	t0002	450	63	33	10	18	0	2	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	t0003	450	6	6	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	t0004	450	5	5	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	t0005	450	4	4	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629