JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KYNU_chr2_142872664_143060833	0/0	t0048	13748	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0049	13744	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0050	13746	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0051	13742	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0052	13738	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0053	13740	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0054	13748	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0055	13742	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0056	13750	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0057	13742	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0058	13750	1	0	0	0	1	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0059	13742	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0060	13732	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0061	13736	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0062	13742	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0063	13746	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0064	13738	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0065	13746	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0066	13744	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0067	13748	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0068	13742	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0069	13746	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0070	13738	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0071	13913	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0072	13894	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0073	13887	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0074	13899	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0075	13886	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0076	13857	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0077	13752	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0078	13752	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0079	13756	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0080	13749	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	1/0	t0081	13754	1	0	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0082	13754	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0083	13755	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0084	13763	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0085	13764	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0086	13756	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0087	13755	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0088	13748	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0089	13835	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0090	13750	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0091	13751	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0092	13744	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0093	13749	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0094	13750	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0095	13730	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0096	13751	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0097	13740	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833