JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KYNU_chr2_142872664_143060833	0/0	t0148	13729	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0149	13729	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0150	13737	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0151	13726	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0152	13726	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0153	13734	1	0	0	0	1	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0154	13738	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0155	13736	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0156	13734	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0157	13734	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0158	13727	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0159	13731	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0160	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0161	13730	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0162	13742	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0163	13717	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0164	13733	1	0	0	0	1	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0165	13729	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0166	13730	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0167	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0168	13734	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0169	13734	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0170	13742	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0171	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0172	13730	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0173	13734	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0174	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0175	13738	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0176	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0177	13730	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0178	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0179	13742	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0180	13739	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0181	13735	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0182	13739	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0183	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0184	13734	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0185	13738	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0186	13731	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0187	13738	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0188	13738	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0189	13738	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0190	13732	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0191	13736	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0192	13735	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0193	13732	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0194	13744	1	0	0	0	0	1	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0195	13730	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0196	13742	1	0	1	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0197	13742	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833