JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KYNU_chr2_142872664_143060833	0/0	t0198	13740	1	0	0	1	0	0	copy fasta	KYNU	chr2	142872664	143060833
KYNU_chr2_142872664_143060833	0/0	t0199	13764	1	1	0	0	0	0	copy fasta	KYNU	chr2	142872664	143060833
KY_chr3_134594923_134656022	0/1	t0001	3729	134	38	30	45	8	12	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0002	3730	75	24	14	16	3	18	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0003	3729	15	0	5	0	3	7	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0004	3730	13	2	0	11	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0005	3729	10	0	5	5	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0006	3730	8	1	0	7	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0007	3730	5	4	1	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0008	3729	4	4	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	1/0	t0009	3719	3	2	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0010	3730	3	2	1	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0011	3729	3	3	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0012	3729	2	0	2	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0013	3729	2	0	0	0	0	2	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0014	3729	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0015	3730	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0016	3730	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0017	3719	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0018	3729	1	0	0	0	0	1	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0019	3730	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0020	3719	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0021	3730	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0022	3729	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0023	3729	1	0	1	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0024	3729	1	0	0	1	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0025	3729	1	0	0	0	0	1	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0026	3729	1	0	0	0	0	1	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0027	3729	1	0	0	0	0	1	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0028	3729	1	1	0	0	0	0	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0029	3729	1	0	0	0	0	1	copy fasta	KY	chr3	134594923	134656022
KY_chr3_134594923_134656022	0/0	t0030	3730	1	0	1	0	0	0	copy fasta	KY	chr3	134594923	134656022
L1CAM_chrX_153856516_153891173	1/1	t0001	1365	260	68	45	106	9	30	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0002	1365	3	3	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0003	1365	2	0	2	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0004	1366	2	0	0	1	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0005	1365	2	1	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0006	1374	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0007	1372	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0008	1371	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0009	1365	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0010	1366	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0011	1366	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0012	1365	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0013	1365	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0014	1365	1	0	1	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0015	1365	1	1	0	0	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0016	1366	1	0	0	0	0	1	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0017	1366	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1CAM_chrX_153856516_153891173	0/0	t0018	1366	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173