JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
L1CAM_chrX_153856516_153891173	0/0	t0019	1365	1	0	0	1	0	0	copy fasta	L1CAM	chrX	153856516	153891173
L1TD1_chr1_62189849_62217328	1/0	t0001	1234	78	33	13	22	3	6	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0002	1234	68	0	9	59	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0003	1234	59	20	8	19	1	11	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0004	1235	49	5	15	16	2	11	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0005	1234	49	0	6	32	4	7	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0006	1237	23	8	12	0	1	2	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0007	1234	12	0	1	11	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0008	1234	11	1	9	0	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0009	1237	10	0	0	10	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0010	1237	6	5	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0011	1237	6	0	1	0	2	3	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0012	1233	6	5	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0013	1234	5	5	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0014	1235	3	1	2	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0015	1234	3	0	0	3	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0016	1235	3	2	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0017	1234	2	1	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0018	1234	2	0	0	1	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0019	1234	2	2	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0020	1234	1	0	1	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0021	1234	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/1	t0022	1234	1	0	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0023	1234	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0024	1237	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0025	1235	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0026	1237	1	0	0	0	1	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0027	1237	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0028	1234	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0029	1234	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0030	1234	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0031	1237	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0032	1234	1	0	0	1	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0033	1235	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0034	1234	1	0	0	0	0	1	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0035	1237	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L1TD1_chr1_62189849_62217328	0/0	t0036	1234	1	1	0	0	0	0	copy fasta	L1TD1	chr1	62189849	62217328
L2HGDH_chr14_50237434_50317229	0/0	t0001	4699	77	11	14	42	2	8	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0002	4697	54	2	17	26	1	8	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/1	t0003	4710	35	4	8	13	2	7	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0004	4704	20	0	3	6	2	9	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0005	4697	15	9	4	0	2	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0006	4711	9	1	1	6	0	1	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0007	4703	9	9	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0008	4712	7	0	0	5	0	2	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0009	4700	6	1	2	3	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0010	4698	6	0	2	4	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0011	4696	6	6	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0012	4699	5	0	0	4	1	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0013	4699	5	5	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229