JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
L2HGDH_chr14_50237434_50317229	0/0	t0014	4704	4	4	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0015	4704	4	4	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0016	4702	3	0	0	0	1	2	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0017	4706	3	0	0	3	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0018	4704	3	0	3	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0019	4702	3	3	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0020	4698	3	3	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0021	4708	3	0	3	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0022	4710	3	3	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0023	4697	3	0	0	3	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0024	4696	3	3	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0025	4696	3	0	3	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0026	4699	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0027	4705	2	0	0	0	0	2	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0028	4703	2	1	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0029	4712	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0030	4700	2	0	0	1	0	1	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0031	4702	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0032	4700	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0033	4701	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0034	4711	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0035	4714	2	0	0	1	1	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0036	4714	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0037	4698	2	1	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0038	4698	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0039	4699	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0040	4697	2	2	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0041	4703	2	0	0	2	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0042	4698	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	1/0	t0043	4704	1	0	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0044	4709	1	0	0	0	0	1	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0045	4713	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0046	4711	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0047	4715	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0048	4699	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0049	4710	1	0	0	0	0	1	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0050	4700	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0051	4700	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0052	4702	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0053	4710	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0054	4710	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0055	4702	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0056	4712	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0057	4710	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0058	4699	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0059	4699	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0060	4701	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0061	4699	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0062	4699	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0063	4699	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229