JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
L2HGDH_chr14_50237434_50317229	0/0	t0064	4701	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0065	4699	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0066	4699	1	0	0	1	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0067	4699	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0068	4701	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0069	4699	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0070	4697	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0071	4697	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0072	4697	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0073	4697	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0074	4701	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0075	4701	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0076	4703	1	1	0	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L2HGDH_chr14_50237434_50317229	0/0	t0077	4698	1	0	1	0	0	0	copy fasta	L2HGDH	chr14	50237434	50317229
L3HYPDH_chr14_59467606_59489408	1/1	t0001	452	332	82	74	125	10	39	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0002	450	8	0	4	2	2	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0003	452	7	7	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0004	450	2	2	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0005	452	2	0	0	0	2	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0006	452	1	0	0	0	0	1	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0007	450	1	0	0	1	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3HYPDH_chr14_59467606_59489408	0/0	t0008	452	1	1	0	0	0	0	copy fasta	L3HYPDH	chr14	59467606	59489408
L3MBTL1_chr20_43502697_43546895	1/1	t0001	844	350	91	48	156	11	42	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	t0002	844	58	1	13	35	3	6	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	t0003	844	8	0	1	7	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	t0004	844	4	0	4	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	t0005	844	1	0	1	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL1_chr20_43502697_43546895	0/0	t0006	827	1	0	1	0	0	0	copy fasta	L3MBTL1	chr20	43502697	43546895
L3MBTL2_chr22_41200312_41236271	0/1	t0001	1072	128	39	29	41	4	14	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0002	1072	118	29	24	46	6	13	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	1/0	t0003	1072	99	4	8	68	3	15	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0004	1072	11	11	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0005	1072	6	0	0	6	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0006	1072	3	3	0	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0007	1072	2	0	1	0	1	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0008	1072	1	0	1	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0009	1072	1	0	0	1	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL2_chr22_41200312_41236271	0/0	t0010	1021	1	0	1	0	0	0	copy fasta	L3MBTL2	chr22	41200312	41236271
L3MBTL3_chr6_130013581_130146438	1/1	t0001	1864	271	74	46	114	10	25	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0002	1864	5	4	1	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0003	1864	4	3	0	0	0	1	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0004	1864	4	1	2	0	0	1	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0005	1864	4	4	0	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0006	1864	2	2	0	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0007	1864	1	1	0	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0008	1864	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0009	1864	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0010	1864	1	0	0	0	0	1	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0011	1864	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0012	1864	1	1	0	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438