JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
L3MBTL3_chr6_130013581_130146438	0/0	t0013	1864	1	0	0	1	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL3_chr6_130013581_130146438	0/0	t0014	1864	1	0	1	0	0	0	copy fasta	L3MBTL3	chr6	130013581	130146438
L3MBTL4_chr18_5949717_6419911	0/0	t0001	1708	31	19	4	4	0	4	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0002	1705	27	15	5	6	0	1	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	1/1	t0003	1705	11	1	3	0	0	5	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0004	1705	9	6	1	2	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0005	1705	7	7	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0006	1705	3	2	1	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0007	1705	3	3	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0008	1705	2	0	2	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
L3MBTL4_chr18_5949717_6419911	0/0	t0009	1705	1	1	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
LACC1_chr13_43874904_43898932	0/1	t0001	2734	205	30	31	111	4	28	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	1/0	t0002	2735	61	17	11	31	0	1	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0003	2734	61	3	18	22	4	14	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0004	2733	32	11	4	14	2	1	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0005	2734	20	0	4	15	1	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0006	2734	10	0	0	10	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0007	2733	10	9	1	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0008	2733	9	3	3	0	1	2	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0009	2734	6	0	0	6	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0010	2735	6	6	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0011	2735	4	0	0	4	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0012	2735	4	3	1	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0013	2733	3	3	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0014	2733	3	0	0	3	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0015	2734	2	0	0	2	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0016	2735	2	0	0	2	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0017	2733	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0018	2734	1	0	0	0	0	1	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0019	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0020	2734	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0021	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0022	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0023	2734	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0024	2734	1	0	1	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0025	2734	1	0	0	0	0	1	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0026	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0027	2735	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0028	2735	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0029	2735	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0030	2734	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0031	2735	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0032	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0033	2734	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	t0034	2734	1	0	0	1	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACRT_chr12_54625811_54639895	1/1	t0001	136	413	96	76	180	18	41	copy fasta	LACRT	chr12	54625811	54639895
LACRT_chr12_54625811_54639895	0/0	t0002	136	1	0	0	0	0	1	copy fasta	LACRT	chr12	54625811	54639895
LACTB2_chr8_70632266_70674185	0/1	t0001	660	227	52	35	100	10	29	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	1/0	t0002	660	77	6	15	51	1	3	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/0	t0003	660	45	28	11	1	1	4	copy fasta	LACTB2	chr8	70632266	70674185