Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP5Z1_chr7_4770623_4799397	0/0	t0015	3106	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0016	3106	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0017	3105	2	0	1	0	1	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0018	3106	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0019	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0020	3146	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0021	3145	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0022	3106	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0023	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0024	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0025	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0026	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0027	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0028	3122	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0029	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0030	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0031	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0032	3108	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0033	3108	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0034	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0035	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0036	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0037	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0038	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0039	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0040	3106	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0041	3122	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0042	3106	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0043	3122	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0044	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0045	3145	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0046	3106	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0047	3105	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0048	3105	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	t0049	3105	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
APAF1_chr12_98640290_98740433	1/0	t0001	3455	165	30	32	65	7	30	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0002	3454	35	1	3	26	0	5	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0003	3454	30	2	0	25	0	3	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/1	t0004	3454	27	12	7	0	3	4	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0005	3455	21	0	0	21	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0006	3454	16	0	6	8	1	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0007	3454	8	6	0	0	0	2	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0008	3454	7	6	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0009	3455	5	5	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0010	3455	5	0	0	5	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0011	3454	4	0	0	4	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0012	3454	4	4	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0013	3454	3	3	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0014	3455	3	2	0	0	0	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0015	3454	3	3	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433