JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LACTB2_chr8_70632266_70674185	0/0	t0004	660	2	1	1	0	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/0	t0005	660	1	1	0	0	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTBL1_chr1_22948043_22977866	0/1	t0001	211	445	92	80	214	15	43	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	1/0	t0002	211	5	0	0	0	3	1	copy fasta	LACTBL1	chr1	22948043	22977866
LACTB_chr15_63116861_63147061	0/1	t0001	268	339	73	45	178	11	31	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	1/0	t0002	268	75	25	29	0	5	15	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	t0003	268	1	0	0	1	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	t0004	268	1	0	0	1	0	0	copy fasta	LACTB	chr15	63116861	63147061
LAD1_chr1_201375833_201404324	1/1	t0001	1074	347	61	59	174	11	40	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0002	1074	29	19	5	0	1	4	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0003	1074	13	0	0	13	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0004	1074	12	0	0	12	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0005	1074	10	8	2	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0006	1074	7	2	3	0	2	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0007	1074	5	0	0	5	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0008	1074	3	2	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0009	1074	2	2	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0010	1074	2	2	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0011	1074	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	t0012	1034	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAG3_chr12_6767520_6783455	1/1	t0001	399	442	79	82	211	18	50	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	t0002	399	25	15	4	6	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	t0003	399	4	4	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	t0004	378	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAGE3_chrX_154472775_154484281	1/1	t0001	536	209	30	47	103	11	16	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	t0002	536	72	41	4	11	0	16	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	t0003	536	1	0	0	0	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	t0004	536	1	1	0	0	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	t0005	536	1	0	0	0	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	t0006	536	1	1	0	0	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAIR1_chr19_54346384_54369931	0/1	t0001	4014	111	11	33	48	5	13	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0002	4017	109	10	20	59	3	17	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0003	4017	76	15	8	47	2	4	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0004	4014	21	0	1	20	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	1/0	t0005	4012	12	0	0	10	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0006	4012	10	0	4	5	1	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0007	4016	10	0	5	0	2	3	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0008	4015	9	9	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0009	4015	6	4	2	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0010	4014	5	0	0	5	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0011	4016	5	0	3	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0012	4018	5	5	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0013	4015	4	4	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0014	4014	4	4	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0015	4014	4	3	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0016	4017	3	0	0	3	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0017	4015	3	0	3	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0018	4014	3	3	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0019	4014	3	3	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0020	4013	3	3	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931