JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAIR1_chr19_54346384_54369931	0/0	t0021	4015	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0022	4013	2	0	0	1	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0023	4015	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0024	4014	2	1	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0025	4017	2	0	1	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0026	4012	2	0	0	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0027	4017	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0028	4017	2	0	0	0	1	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0029	4015	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0030	4015	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0031	4014	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0032	4017	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0033	128	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0034	4017	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0035	4015	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0036	4014	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0037	4031	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0038	4017	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0039	4014	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0040	4014	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0041	4014	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0042	4014	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0043	4017	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0044	4017	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0045	4016	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0046	4014	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0047	4017	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0048	4014	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0049	4015	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0050	4016	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0051	4015	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0052	4017	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0053	4015	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0054	4014	1	0	0	0	1	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0055	4014	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0056	4013	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0057	4014	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0058	4018	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0059	4017	1	0	0	0	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0060	4015	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0061	4017	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0062	4017	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0063	4014	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0064	4014	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0065	4017	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0066	4017	1	0	0	0	1	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	t0067	4014	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR2_chr19_54497831_54515687	0/1	t0001	207	315	56	61	156	13	28	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0002	207	58	0	9	44	0	5	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0003	207	50	9	6	27	0	8	copy fasta	LAIR2	chr19	54497831	54515687