JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAIR2_chr19_54497831_54515687	0/0	t0004	207	18	17	1	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0005	207	14	0	8	0	3	3	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0006	207	5	5	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0007	207	4	4	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0008	207	3	1	0	0	0	2	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0009	207	2	2	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0010	207	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0011	207	1	0	1	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0012	207	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0013	207	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0014	207	1	1	0	0	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LAIR2_chr19_54497831_54515687	0/0	t0015	207	1	0	0	1	0	0	copy fasta	LAIR2	chr19	54497831	54515687
LALBA_chr12_48562684_48575046	1/1	t0001	300	451	99	80	208	16	46	copy fasta	LALBA	chr12	48562684	48575046
LALBA_chr12_48562684_48575046	0/0	t0002	300	1	1	0	0	0	0	copy fasta	LALBA	chr12	48562684	48575046
LAMA1_chr18_6936742_7122797	1/1	t0001	415	146	62	30	35	5	12	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0002	415	120	20	32	39	9	20	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0003	415	8	8	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0004	415	1	0	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0005	415	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0006	415	1	1	0	0	0	0	copy fasta	LAMA1	chr18	6936742	7122797
LAMA1_chr18_6936742_7122797	0/0	t0007	415	1	0	0	0	0	1	copy fasta	LAMA1	chr18	6936742	7122797
LAMA2_chr6_128878138_129521566	0/1	t0001	325	29	11	4	8	4	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	1/0	t0002	328	26	19	0	1	0	5	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0003	325	16	11	2	1	1	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0004	328	6	0	0	4	1	1	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0005	329	5	5	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0006	325	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0007	328	2	2	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0008	325	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA2_chr6_128878138_129521566	0/0	t0009	325	1	1	0	0	0	0	copy fasta	LAMA2	chr6	128878138	129521566
LAMA3_chr18_23684453_23960066	1/1	t0001	650	201	61	28	77	7	26	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0002	650	70	14	19	18	7	12	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0003	650	5	0	5	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0004	650	1	1	0	0	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0005	650	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0006	650	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23684453_23960066	0/0	t0007	650	1	0	0	1	0	0	copy fasta	LAMA3	chr18	23684453	23960066
LAMA3_chr18_23868020_23960066	1/1	t0001	444	241	65	30	109	7	28	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	t0002	444	82	17	21	25	7	12	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	t0003	444	5	0	5	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	t0004	445	4	4	0	0	0	0	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	t0005	444	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA3_chr18_23868020_23960066	0/0	t0006	444	1	0	0	0	0	1	copy fasta	LAMA3	chr18	23868020	23960066
LAMA4_chr6_112102931_112259567	1/1	t0001	1757	205	39	38	100	3	23	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0002	1757	74	17	12	34	3	8	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0003	1757	15	15	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0004	1757	7	1	4	0	2	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0005	1757	3	3	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0006	1757	2	2	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0007	1757	1	1	0	0	0	0	copy fasta	LAMA4	chr6	112102931	112259567