JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMA4_chr6_112102931_112259567	0/0	t0008	1757	1	0	0	0	0	1	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0009	1757	1	0	0	0	1	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0010	1757	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0011	1757	1	0	0	0	1	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0012	1757	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0013	1757	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA4_chr6_112102931_112259567	0/0	t0014	1757	1	0	0	1	0	0	copy fasta	LAMA4	chr6	112102931	112259567
LAMA5_chr20_62304065_62372312	1/0	t0001	339	174	58	35	44	8	28	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/1	t0002	339	5	0	2	0	0	2	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	t0003	339	4	0	4	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	t0004	339	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	t0005	339	1	0	0	1	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMA5_chr20_62304065_62372312	0/0	t0006	339	1	0	1	0	0	0	copy fasta	LAMA5	chr20	62304065	62372312
LAMB1_chr7_107918799_108008161	0/1	t0001	290	266	78	38	126	6	17	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	1/0	t0002	290	93	14	27	24	8	19	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	t0003	290	4	4	0	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB1_chr7_107918799_108008161	0/0	t0004	290	1	0	1	0	0	0	copy fasta	LAMB1	chr7	107918799	108008161
LAMB2_chr3_49116114_49138050	1/1	t0001	296	294	86	60	92	16	38	copy fasta	LAMB2	chr3	49116114	49138050
LAMB3_chr1_209609870_209657425	1/1	t0001	496	298	59	51	148	7	31	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0002	496	134	22	29	63	5	15	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0003	496	8	6	2	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0004	496	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0005	496	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0006	496	1	0	0	1	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB3_chr1_209609870_209657425	0/0	t0007	496	1	1	0	0	0	0	copy fasta	LAMB3	chr1	209609870	209657425
LAMB4_chr7_108018553_108135361	1/1	t0001	576	190	33	41	83	9	22	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	t0002	576	68	55	6	6	1	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	t0003	576	32	1	1	24	0	6	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	t0004	576	1	1	0	0	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMB4_chr7_108018553_108135361	0/0	t0005	576	1	0	0	1	0	0	copy fasta	LAMB4	chr7	108018553	108135361
LAMC1_chr1_183018420_183150592	1/0	t0001	3100	115	29	15	50	6	14	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0002	3100	102	11	24	55	3	9	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0003	3100	35	1	7	23	1	3	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0004	3100	8	8	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0005	3100	5	5	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0006	3100	5	0	3	0	1	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0007	3100	5	4	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0008	3100	3	0	0	3	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0009	3100	3	3	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0010	3100	2	2	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0011	3100	2	1	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/1	t0012	3098	2	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0013	3100	2	0	0	2	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0014	3100	1	0	0	0	1	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0015	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0016	3100	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0017	3100	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0018	3100	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0019	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0020	3100	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592