JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMC1_chr1_183018420_183150592	0/0	t0021	3100	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0022	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0023	3100	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0024	3067	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0025	3098	1	0	0	1	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0026	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0027	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0028	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0029	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0030	3100	1	1	0	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0031	3100	1	0	1	0	0	0	copy fasta	LAMC1	chr1	183018420	183150592
LAMC1_chr1_183018420_183150592	0/0	t0032	3100	1	0	0	0	0	1	copy fasta	LAMC1	chr1	183018420	183150592
LAMC2_chr1_183181264_183250127	1/0	t0001	1817	67	11	16	24	5	10	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0002	1817	49	1	10	33	4	1	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/1	t0003	1817	48	0	9	28	2	8	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0004	1817	32	10	5	15	0	2	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0005	1817	30	13	3	8	1	5	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0006	1817	20	6	1	12	0	1	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0007	1817	9	1	2	3	1	2	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0008	1817	8	0	0	8	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0009	1817	8	8	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0010	1817	7	0	4	3	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0011	1817	6	6	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0012	1817	6	6	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0013	1817	5	0	0	5	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0014	1817	4	0	1	3	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0015	1817	3	3	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0016	1814	3	3	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0017	1817	3	3	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0018	1817	3	3	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0019	1814	2	2	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0020	1817	2	2	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0021	1817	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0022	1817	2	2	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0023	1817	2	1	0	0	0	1	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0024	1817	2	1	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0025	1817	2	2	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0026	1817	1	0	0	0	1	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0027	1817	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0028	1817	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0029	1817	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0030	1817	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0031	1817	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0032	1817	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0033	1817	1	0	1	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0034	1817	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0035	1817	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC2_chr1_183181264_183250127	0/0	t0036	1817	1	1	0	0	0	0	copy fasta	LAMC2	chr1	183181264	183250127
LAMC3_chr9_131004174_131099473	0/1	t0001	2730	130	14	28	66	8	13	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0002	2728	113	28	13	57	1	14	copy fasta	LAMC3	chr9	131004174	131099473