JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMC3_chr9_131004174_131099473	0/0	t0003	2730	34	1	11	12	5	5	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0004	2728	10	9	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0005	2730	6	0	4	0	1	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0006	2730	5	5	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0007	2728	4	4	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0008	2727	4	4	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0009	2730	4	4	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0010	2728	3	3	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0011	2730	3	0	0	0	0	3	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0012	2730	3	3	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0013	2730	3	0	0	3	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0014	2730	2	2	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0015	2728	2	2	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0016	2728	2	0	2	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0017	2730	2	1	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0018	2730	2	0	2	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0019	2730	2	0	0	1	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0020	2730	2	0	0	2	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0021	2728	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0022	2728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0023	2728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0024	2728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0025	2730	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0026	2730	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0027	2728	1	0	0	0	0	1	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0028	2728	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0029	2730	1	0	0	0	1	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0030	2730	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0031	2730	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0032	2730	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0033	2730	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0034	2730	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0035	2730	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0036	2730	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0037	2730	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0038	2730	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0039	2730	1	0	0	1	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0040	2730	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0041	2730	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	1/0	t0042	2728	1	0	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0043	2728	1	1	0	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMC3_chr9_131004174_131099473	0/0	t0044	2730	1	0	1	0	0	0	copy fasta	LAMC3	chr9	131004174	131099473
LAMP1_chr13_113292239_113328672	0/0	t0001	1448	238	31	60	104	11	32	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0002	1449	26	4	2	20	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0003	1448	17	16	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0004	1448	13	11	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0005	1450	13	11	2	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0006	1423	10	2	5	0	0	3	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0007	1448	4	4	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0008	1448	3	0	0	3	0	0	copy fasta	LAMP1	chr13	113292239	113328672