JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMP1_chr13_113292239_113328672	0/0	t0009	1448	2	0	0	2	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0010	1473	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0011	1448	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0012	1448	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0013	1422	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0014	1473	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0015	1448	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0016	1449	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0017	1423	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0018	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0019	1448	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0020	1473	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0021	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0022	1448	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0023	1423	1	0	0	0	1	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0024	1550	1	0	0	0	1	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0025	1422	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0026	1474	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0027	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0028	1473	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0029	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0030	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0031	1448	1	0	0	0	0	1	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0032	1448	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0033	1422	1	0	0	0	1	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0034	1396	1	1	0	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0035	1448	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0036	1448	1	0	0	1	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP1_chr13_113292239_113328672	0/0	t0037	1448	1	0	1	0	0	0	copy fasta	LAMP1	chr13	113292239	113328672
LAMP2_chrX_120421148_120474296	0/0	t0001	5303	67	3	11	44	1	8	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0002	5303	66	5	12	38	2	9	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	1/1	t0003	5303	51	15	12	5	6	11	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0004	5303	22	5	0	16	0	1	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0005	5300	13	0	2	11	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0006	5304	11	2	0	9	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0007	5270	6	6	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0008	5303	5	5	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0009	5303	5	5	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0010	5303	4	3	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0011	5303	3	0	0	3	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0012	5303	3	0	0	3	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0013	5303	3	3	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0014	5274	3	1	2	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0015	5270	3	1	2	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0016	5298	2	2	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0017	5303	2	0	0	0	1	1	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0018	5305	2	2	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0019	5272	2	2	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0020	5308	2	2	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0021	5303	1	0	0	0	0	1	copy fasta	LAMP2	chrX	120421148	120474296