JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMP2_chrX_120421148_120474296	0/0	t0022	5305	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0023	5303	1	0	0	0	1	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0024	5291	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0025	5303	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0026	5303	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0027	5303	1	0	0	1	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0028	5303	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0029	5303	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0030	5303	1	0	0	1	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0031	5303	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0032	5302	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0033	5299	1	0	0	1	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0034	5303	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0035	5304	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0036	5278	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0037	5272	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0038	5298	1	1	0	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0039	5310	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0040	5303	1	0	0	0	0	1	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0041	5294	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP2_chrX_120421148_120474296	0/0	t0042	5303	1	0	1	0	0	0	copy fasta	LAMP2	chrX	120421148	120474296
LAMP3_chr3_183117215_183167734	1/0	t0001	1946	249	35	44	130	9	30	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/1	t0002	1946	53	12	3	33	0	4	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0003	1946	13	13	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0004	1946	12	2	4	0	1	5	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0005	1946	11	9	2	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0006	1946	6	6	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0007	1945	5	5	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0008	1946	4	1	3	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0009	1945	2	2	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0010	1946	2	0	0	2	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0011	1946	2	0	0	2	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0012	1946	2	2	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0013	1946	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0014	1946	1	0	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0015	1946	1	0	1	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0016	1946	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0017	1946	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0018	1946	1	1	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0019	1946	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0020	1946	1	1	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0021	1946	1	0	0	1	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0022	1946	1	0	0	0	0	1	copy fasta	LAMP3	chr3	183117215	183167734
LAMP3_chr3_183117215_183167734	0/0	t0023	1946	1	1	0	0	0	0	copy fasta	LAMP3	chr3	183117215	183167734
LAMP5_chr20_9509590_9535524	0/0	t0001	968	298	54	47	170	7	20	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	1/0	t0002	968	65	10	14	33	4	3	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/1	t0003	968	31	19	5	0	3	3	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0004	968	28	8	5	1	2	12	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0005	968	8	3	5	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0006	976	4	0	0	4	0	0	copy fasta	LAMP5	chr20	9509590	9535524