JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMP5_chr20_9509590_9535524	0/0	t0007	968	3	0	1	0	1	1	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0008	968	2	2	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0009	968	1	0	1	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0010	968	1	0	0	0	1	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0011	968	1	0	0	1	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0012	976	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0013	968	1	0	0	1	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0014	968	1	0	0	0	0	1	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0015	976	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0016	968	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMP5_chr20_9509590_9535524	0/0	t0017	976	1	1	0	0	0	0	copy fasta	LAMP5	chr20	9509590	9535524
LAMTOR1_chr11_72092292_72108297	1/1	t0001	604	403	78	72	207	8	36	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0002	604	14	13	1	0	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0003	604	1	0	0	0	0	1	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0004	604	1	0	1	0	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0005	604	1	0	1	0	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0006	604	1	0	0	1	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0007	604	1	0	1	0	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0008	604	1	0	0	0	0	1	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR1_chr11_72092292_72108297	0/0	t0009	604	1	1	0	0	0	0	copy fasta	LAMTOR1	chr11	72092292	72108297
LAMTOR2_chr1_156049782_156063506	1/1	t0001	244	336	84	66	126	12	46	copy fasta	LAMTOR2	chr1	156049782	156063506
LAMTOR3_chr4_99873336_99899427	1/1	t0001	3789	181	33	39	87	5	15	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0002	3852	76	19	14	34	4	5	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0003	3852	65	4	11	47	0	3	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0004	3852	10	8	1	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0005	3852	9	9	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0006	3849	7	0	2	0	2	3	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0007	3822	7	7	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0008	3885	5	0	0	5	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0009	3849	4	4	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0010	3849	2	0	0	0	0	2	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0011	3852	2	2	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0012	3852	2	0	2	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0013	3852	2	2	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0014	3852	2	0	1	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0015	3852	1	1	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0016	3789	1	1	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0017	3852	1	1	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0018	3789	1	0	0	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0019	3789	1	0	0	1	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0020	3789	1	1	0	0	0	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0021	3759	1	0	0	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0022	3789	1	0	0	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0023	3789	1	0	0	0	1	0	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR3_chr4_99873336_99899427	0/0	t0024	3789	1	0	0	0	0	1	copy fasta	LAMTOR3	chr4	99873336	99899427
LAMTOR4_chr7_100143918_100159203	1/1	t0001	295	377	70	62	183	16	44	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	t0002	295	10	7	3	0	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	t0003	295	8	7	1	0	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	t0004	295	5	0	0	5	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203
LAMTOR4_chr7_100143918_100159203	0/0	t0005	295	4	4	0	0	0	0	copy fasta	LAMTOR4	chr7	100143918	100159203