JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAMTOR5_chr1_110396253_110412694	1/0	t0001	345	408	75	69	207	12	44	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/1	t0002	345	28	9	6	6	0	6	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	t0003	345	5	5	0	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	t0004	345	3	2	1	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	t0005	345	1	1	0	0	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LAMTOR5_chr1_110396253_110412694	0/0	t0006	345	1	0	0	1	0	0	copy fasta	LAMTOR5	chr1	110396253	110412694
LANCL1_chr2_210426251_210481759	0/0	t0001	3393	79	17	11	48	0	3	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	1/0	t0002	3393	76	14	19	28	7	7	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0003	3393	65	8	13	28	4	12	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0004	3393	63	6	6	48	0	3	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0005	3393	12	12	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0006	3393	9	9	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0007	3393	6	0	4	1	0	1	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0008	3393	5	5	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0009	3392	4	4	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0010	3393	4	4	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/1	t0011	3393	4	0	2	0	0	1	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0012	3393	4	3	1	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0013	3393	3	0	3	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0014	3393	3	3	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0015	3393	2	0	0	0	1	1	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0016	3393	2	0	0	2	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0017	3393	2	1	1	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0018	3393	1	0	0	1	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0019	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0020	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0021	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0022	3393	1	0	1	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0023	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0024	3393	1	0	1	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0025	3393	1	0	0	1	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0026	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0027	3393	1	0	0	1	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0028	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0029	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0030	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0031	3393	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL1_chr2_210426251_210481759	0/0	t0032	3392	1	1	0	0	0	0	copy fasta	LANCL1	chr2	210426251	210481759
LANCL2_chr7_55360337_55438737	0/0	t0001	3107	101	4	22	61	2	12	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0002	3107	64	16	13	23	6	6	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0003	3107	54	3	7	33	2	9	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/1	t0004	3107	39	11	4	15	4	4	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0005	3105	26	25	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0006	3107	19	15	1	0	0	3	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0007	3107	5	4	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0008	3107	5	2	1	0	1	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0009	3107	5	0	0	5	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	1/0	t0010	3107	4	0	1	0	1	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0011	3107	4	2	2	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0012	3107	2	2	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737