Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APAF1_chr12_98640290_98740433	0/0	t0016	3455	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0017	3454	2	0	2	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0018	3455	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0019	3455	2	0	0	0	1	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0020	3455	2	0	2	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0021	3455	2	0	0	1	0	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0022	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0023	3455	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0024	3454	1	0	0	1	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0025	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0026	3454	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0027	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0028	3455	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0029	3454	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0030	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0031	3455	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0032	3455	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0033	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0034	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0035	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0036	3454	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0037	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0038	3454	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	t0039	3454	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APBA1_chr9_69422532_69677371	1/1	t0001	4084	51	7	8	25	2	7	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0002	4080	48	19	5	12	3	9	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0003	4080	27	11	4	10	0	2	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0004	4085	12	6	3	0	0	3	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0005	4082	9	2	6	0	0	1	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0006	4083	9	2	2	0	0	5	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0007	4080	8	7	1	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0008	4082	5	5	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0009	4080	4	4	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0010	4080	3	0	0	3	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0011	4083	2	0	2	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0012	4082	2	2	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0013	4079	2	2	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0014	4084	2	0	2	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0015	4080	2	2	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0016	4080	2	0	0	2	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0017	4092	2	2	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0018	4080	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0019	4081	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0020	4082	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0021	4083	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0022	4083	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0023	4080	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0024	4086	1	0	0	0	0	1	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0025	4084	1	0	0	0	0	1	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0026	4084	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371