JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LANCL2_chr7_55360337_55438737	0/0	t0013	3107	2	2	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0014	3107	2	2	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0015	3107	2	0	0	2	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0016	3107	2	0	0	2	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0017	3107	2	0	0	2	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0018	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0019	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0020	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0021	3107	1	0	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0022	3107	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0023	3107	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0024	3107	1	0	0	0	0	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0025	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0026	3105	1	0	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0027	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0028	3107	1	1	0	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0029	3107	1	0	1	0	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0030	3107	1	0	0	0	0	1	copy fasta	LANCL2	chr7	55360337	55438737
LANCL2_chr7_55360337_55438737	0/0	t0031	3107	1	0	0	1	0	0	copy fasta	LANCL2	chr7	55360337	55438737
LANCL3_chrX_37566661_37689463	0/1	t0001	8861	98	3	20	60	4	10	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0002	8868	9	6	3	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0003	8871	8	0	6	2	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0004	8870	5	4	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0005	8873	5	5	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0006	8854	4	0	0	2	0	2	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0007	8866	4	4	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0008	8861	4	4	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0009	8870	4	4	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0010	8855	3	3	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0011	8864	3	0	1	2	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0012	8864	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0013	8866	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0014	8868	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0015	8868	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0016	8865	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0017	8861	2	0	0	0	0	2	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0018	8863	2	0	0	1	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0019	8873	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0020	8877	2	2	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0021	8877	2	1	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0022	8854	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0023	8856	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0024	8858	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0025	8866	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0026	8868	1	0	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0027	8870	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0028	8870	1	0	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0029	8870	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0030	8872	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0031	8872	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463