JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LANCL3_chrX_37566661_37689463	0/0	t0032	8870	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0033	8863	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0034	8861	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0035	8861	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0036	8861	1	0	0	0	1	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0037	8861	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0038	8861	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0039	8862	1	0	0	0	0	1	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0040	8863	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	1/0	t0041	8861	1	0	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0042	8858	1	0	1	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0043	8859	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0044	8867	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0045	8869	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0046	8869	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0047	8871	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0048	8873	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0049	8871	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0050	8875	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0051	8875	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0052	8875	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0053	8877	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0054	8877	1	1	0	0	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LANCL3_chrX_37566661_37689463	0/0	t0055	8859	1	0	0	1	0	0	copy fasta	LANCL3	chrX	37566661	37689463
LAP3_chr4_17572198_17612970	0/1	t0001	650	189	50	41	66	8	23	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	1/0	t0002	650	54	13	11	12	6	11	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0003	640	28	27	1	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0004	637	18	0	3	14	0	1	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0005	650	4	4	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0006	640	2	2	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0007	666	1	1	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0008	650	1	1	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0009	650	1	1	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0010	640	1	1	0	0	0	0	copy fasta	LAP3	chr4	17572198	17612970
LAP3_chr4_17572198_17612970	0/0	t0011	621	1	0	0	0	0	1	copy fasta	LAP3	chr4	17572198	17612970
LAPTM4A_chr2_20027650_20056628	1/1	t0001	664	419	94	71	204	16	32	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	t0002	664	2	2	0	0	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	t0003	664	1	1	0	0	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	t0004	664	1	0	1	0	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4A_chr2_20027650_20056628	0/0	t0005	664	1	1	0	0	0	0	copy fasta	LAPTM4A	chr2	20027650	20056628
LAPTM4B_chr8_97770788_97858013	0/0	t0001	1762	81	1	14	46	5	15	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0002	1761	59	20	10	23	2	4	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0003	1761	55	13	9	28	1	4	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	1/1	t0004	1762	37	0	9	21	1	4	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0005	1761	33	15	3	14	0	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0006	1761	13	13	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0007	1761	12	2	4	6	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0008	1761	11	11	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0009	1777	9	3	3	0	0	3	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0010	1761	9	3	1	5	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013