JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAPTM4B_chr8_97770788_97858013	0/0	t0011	1761	7	0	4	0	2	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0012	1761	6	0	2	3	0	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0013	1761	6	2	0	2	2	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0014	1763	5	1	2	0	2	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0015	1778	4	0	2	0	0	2	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0016	1761	4	0	0	4	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0017	1777	3	2	0	0	0	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0018	1777	2	2	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0019	1777	2	0	2	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0020	1777	2	0	2	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0021	1778	2	0	2	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0022	1762	2	1	0	1	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0023	1761	2	0	0	0	1	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0024	1761	2	0	0	2	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0025	1762	1	0	0	0	0	1	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0026	1779	1	0	1	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0027	1762	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0028	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0029	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0030	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0031	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0032	1761	1	0	0	1	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0033	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0034	1763	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0035	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM4B_chr8_97770788_97858013	0/0	t0036	1761	1	1	0	0	0	0	copy fasta	LAPTM4B	chr8	97770788	97858013
LAPTM5_chr1_30727469_30762774	0/0	t0001	1389	195	62	40	78	1	14	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	1/0	t0002	1389	120	4	23	58	7	27	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0003	1389	35	0	8	15	6	6	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0004	1389	25	7	1	17	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0005	1385	7	6	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0006	1389	6	5	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0007	1389	5	0	0	5	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0008	1389	5	3	2	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0009	1388	5	1	0	4	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0010	1389	4	4	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0011	1388	3	3	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0012	1389	3	0	0	3	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0013	1385	2	2	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0014	1389	1	0	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0015	1389	1	0	1	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0016	1389	1	1	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0017	1389	1	1	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0018	1389	1	0	0	0	0	1	copy fasta	LAPTM5	chr1	30727469	30762774
LAPTM5_chr1_30727469_30762774	0/0	t0019	1389	1	1	0	0	0	0	copy fasta	LAPTM5	chr1	30727469	30762774
LARGE1_chr22_33267509_33925476	1/1	t0001	2483	31	14	5	3	3	4	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0002	2483	9	0	6	2	1	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0003	2483	7	4	1	0	0	2	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0004	2487	7	5	2	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0005	2483	6	5	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476