JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LARGE1_chr22_33267509_33925476	0/0	t0006	2483	6	5	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0007	2483	5	4	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0008	2483	5	5	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0009	2483	5	3	1	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0010	2483	3	3	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0011	2483	2	2	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0012	2483	2	0	1	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0013	2487	2	2	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0014	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0015	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0016	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0017	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0018	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0019	2487	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0020	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0021	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0022	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0023	2483	1	0	0	0	0	1	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0024	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0025	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0026	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0027	2483	1	0	0	1	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0028	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0029	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0030	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0031	2483	1	0	1	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0032	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE1_chr22_33267509_33925476	0/0	t0033	2483	1	1	0	0	0	0	copy fasta	LARGE1	chr22	33267509	33925476
LARGE2_chr11_45917656_45934096	1/1	t0001	387	412	87	76	182	17	48	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	t0002	387	4	4	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	t0003	387	1	0	0	0	1	0	copy fasta	LARGE2	chr11	45917656	45934096
LARGE2_chr11_45917656_45934096	0/0	t0004	387	1	1	0	0	0	0	copy fasta	LARGE2	chr11	45917656	45934096
LARP1B_chr4_128056312_128216988	0/0	t0001	2103	109	27	29	34	4	15	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	1/1	t0002	2103	108	24	14	55	5	8	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0003	2103	55	1	13	25	5	11	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0004	2103	23	0	1	22	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0005	2103	10	9	1	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0006	2100	8	8	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0007	2103	4	4	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0008	2103	4	0	4	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0009	2103	3	3	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0010	2100	3	2	1	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0011	2103	2	0	0	2	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0012	2103	2	0	0	2	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0013	2103	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0014	2103	1	0	1	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0015	2103	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0016	2103	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1B_chr4_128056312_128216988	0/0	t0017	2103	1	1	0	0	0	0	copy fasta	LARP1B	chr4	128056312	128216988
LARP1_chr5_154750377_154822605	0/1	t0001	3891	121	20	20	55	5	20	copy fasta	LARP1	chr5	154750377	154822605