JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LARP1_chr5_154750377_154822605	0/0	t0002	3891	66	22	15	11	8	10	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0003	3890	29	7	5	10	3	4	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0004	3891	13	10	3	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0005	3892	13	0	1	8	0	4	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0006	3890	10	9	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0007	3892	7	7	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0008	3891	5	4	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0009	3892	4	2	2	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0010	3891	4	2	2	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0011	3891	4	0	0	4	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0012	3891	3	0	2	0	0	1	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0013	3890	3	0	3	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0014	3891	3	1	0	1	0	1	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0015	3892	2	0	1	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0016	3891	2	1	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0017	3893	2	2	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0018	3891	2	0	0	0	0	2	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	1/0	t0019	3891	1	0	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0020	3891	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0021	3892	1	1	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0022	3890	1	1	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0023	3890	1	0	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0024	3891	1	1	0	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0025	3891	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0026	3891	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0027	3891	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0028	3893	1	0	0	1	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP1_chr5_154750377_154822605	0/0	t0029	3891	1	0	1	0	0	0	copy fasta	LARP1	chr5	154750377	154822605
LARP4B_chr10_804497_936705	0/1	t0001	3747	121	41	26	39	3	11	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0002	3749	60	4	11	30	5	10	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0003	3748	9	1	4	0	2	2	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0004	3749	7	7	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0005	3747	6	0	3	3	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0006	3749	6	4	1	1	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0007	3748	6	0	6	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0008	3748	5	0	1	2	1	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0009	3746	4	1	0	2	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0010	3748	4	2	0	2	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	1/0	t0011	3747	4	3	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0012	3747	4	4	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0013	3749	4	0	0	4	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0014	3746	4	0	1	0	3	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0015	3747	3	1	2	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0016	3749	3	1	0	2	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0017	3748	3	3	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0018	3748	2	2	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0019	3747	2	0	1	0	1	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0020	3750	2	0	0	2	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0021	3749	2	0	0	0	2	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0022	3748	2	1	0	1	0	0	copy fasta	LARP4B	chr10	804497	936705