JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LARP4B_chr10_804497_936705	0/0	t0023	3747	2	0	2	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0024	3746	1	0	0	1	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0025	3746	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0026	3747	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0027	3748	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0028	3748	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0029	3747	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0030	3747	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0031	3747	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0032	3747	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0033	3748	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0034	3749	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0035	3749	1	0	0	1	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0036	3749	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0037	3748	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0038	3748	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0039	3749	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0040	3748	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0041	3747	1	0	1	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0042	3747	1	0	0	0	0	1	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0043	3748	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0044	3739	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0045	3747	1	0	0	0	1	0	copy fasta	LARP4B	chr10	804497	936705
LARP4B_chr10_804497_936705	0/0	t0046	3748	1	1	0	0	0	0	copy fasta	LARP4B	chr10	804497	936705
LARP4_chr12_50395885_50485004	0/0	t0001	4268	144	42	16	70	1	15	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/1	t0002	4268	124	9	24	67	9	14	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	1/0	t0003	4267	9	6	2	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0004	4270	7	4	0	3	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0005	4268	6	6	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0006	4268	5	5	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0007	4268	4	3	1	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0008	4268	3	3	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0009	4268	2	0	2	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0010	4267	2	2	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0011	4268	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0012	4268	1	0	1	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0013	4268	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0014	4268	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0015	4268	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0016	4267	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0017	4268	1	0	0	0	0	1	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0018	4268	1	0	0	1	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0019	4268	1	0	1	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0020	4268	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0021	4270	1	1	0	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP4_chr12_50395885_50485004	0/0	t0022	4268	1	0	1	0	0	0	copy fasta	LARP4	chr12	50395885	50485004
LARP6_chr15_70824130_70859157	1/0	t0001	2992	191	64	23	71	9	23	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/1	t0002	2992	129	1	33	77	3	14	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0003	2992	16	12	4	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0004	2992	10	0	0	10	0	0	copy fasta	LARP6	chr15	70824130	70859157