JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LARP6_chr15_70824130_70859157	0/0	t0005	2992	8	7	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0006	2992	5	4	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0007	2992	5	0	0	2	0	3	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0008	2992	3	0	0	3	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0009	2992	3	2	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0010	2992	2	2	0	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0011	2992	2	0	1	0	1	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0012	2992	2	0	2	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0013	2992	2	0	0	0	0	2	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0014	2992	1	0	0	0	0	1	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0015	2992	1	1	0	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0016	2992	1	0	0	0	0	1	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0017	2992	1	0	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0018	2992	1	1	0	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0019	2992	1	1	0	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0020	2992	1	1	0	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0021	2992	1	0	0	1	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0022	3339	1	0	1	0	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0023	2992	1	0	0	1	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0024	2992	1	0	0	0	1	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0025	2992	1	0	0	1	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0026	2992	1	0	0	1	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP6_chr15_70824130_70859157	0/0	t0027	2992	1	0	0	1	0	0	copy fasta	LARP6	chr15	70824130	70859157
LARP7_chr4_112632143_112662586	1/1	t0001	359	239	79	39	86	13	20	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0002	359	145	12	19	94	2	18	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0003	359	15	3	1	11	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0004	359	10	3	5	0	1	1	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0005	359	4	0	0	4	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0006	359	4	3	1	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0007	359	1	0	1	0	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0008	359	1	0	0	0	0	1	copy fasta	LARP7	chr4	112632143	112662586
LARP7_chr4_112632143_112662586	0/0	t0009	359	1	0	0	1	0	0	copy fasta	LARP7	chr4	112632143	112662586
LARS1_chr5_146108034_146187650	1/0	t0001	1230	160	55	28	50	7	19	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/1	t0002	1221	79	0	17	45	3	13	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0003	1230	13	11	2	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0004	1230	10	9	1	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0005	1230	7	0	3	0	1	3	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0006	1230	5	2	0	0	1	2	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0007	1230	3	0	0	3	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0008	1230	3	1	1	0	0	1	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0009	1230	2	2	0	0	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0010	1230	1	0	0	1	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS1_chr5_146108034_146187650	0/0	t0011	1230	1	0	0	1	0	0	copy fasta	LARS1	chr5	146108034	146187650
LARS2_chr3_45383576_45554407	0/0	t0001	2070	143	28	30	57	9	19	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	1/0	t0002	2070	23	20	2	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/1	t0003	2070	22	6	7	5	1	2	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0004	2070	22	3	5	10	0	4	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0005	2070	5	5	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0006	2070	4	2	0	0	0	2	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0007	2070	3	0	0	3	0	0	copy fasta	LARS2	chr3	45383576	45554407