JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LARS2_chr3_45383576_45554407	0/0	t0008	2070	3	0	0	2	0	1	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0009	2070	2	0	0	0	0	2	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0010	2070	2	0	1	0	1	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0011	2070	2	1	1	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0012	2070	1	0	0	0	0	1	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0013	2070	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0014	2070	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0015	2070	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0016	2070	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0017	2070	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0018	2070	1	0	0	0	1	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0019	2070	1	0	0	0	0	1	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0020	2070	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0021	2070	1	0	0	1	0	0	copy fasta	LARS2	chr3	45383576	45554407
LARS2_chr3_45383576_45554407	0/0	t0022	2070	1	1	0	0	0	0	copy fasta	LARS2	chr3	45383576	45554407
LAS1L_chrX_65507582_65539787	1/1	t0001	266	201	58	33	79	9	20	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	t0002	266	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	t0003	268	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LASP1NB_chr17_38920614_38934381	0/0	t0001	3166	124	23	37	47	4	13	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/1	t0002	3164	75	10	10	27	6	21	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0003	3166	40	0	0	39	0	1	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	1/0	t0004	3166	31	1	9	13	4	3	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0005	3166	29	1	4	23	0	1	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0006	3156	16	0	0	15	0	1	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0007	3162	16	0	3	13	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0008	3162	8	8	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0009	3166	7	0	1	6	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0010	3168	7	1	5	0	0	1	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0011	3164	6	6	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0012	3166	6	4	1	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0013	3152	6	6	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0014	3166	5	5	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0015	3160	4	4	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0016	3165	4	4	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0017	3164	3	2	1	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0018	3168	3	1	0	2	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0019	3164	2	0	0	2	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0020	3166	2	0	0	0	0	2	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0021	3166	2	2	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0022	3166	2	2	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0023	3164	2	1	1	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0024	3166	2	0	0	2	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0025	3155	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0026	3166	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0027	3165	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0028	3162	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0029	3164	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0030	3162	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0031	3166	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0032	3164	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381