JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LASP1NB_chr17_38920614_38934381	0/0	t0033	3164	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0034	3166	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0035	3168	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0036	3166	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0037	3166	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0038	3166	1	0	1	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0039	3166	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0040	3166	1	0	0	0	0	1	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0041	3168	1	0	1	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0042	3168	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0043	1262	1	0	0	1	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1NB_chr17_38920614_38934381	0/0	t0044	3164	1	1	0	0	0	0	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1_chr17_38865058_38926770	0/0	t0001	3140	118	11	32	52	2	21	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0002	3140	108	26	25	36	6	15	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	1/1	t0003	3125	80	5	11	49	3	10	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0004	3140	33	21	6	1	4	1	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0005	3140	9	0	0	8	0	1	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0006	3140	7	7	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0007	3140	4	4	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0008	3140	3	2	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0009	3140	3	3	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0010	3140	2	1	0	0	1	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0011	3125	2	0	0	2	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0012	3125	2	0	0	2	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0013	3140	2	0	0	2	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0014	3140	2	2	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0015	3140	2	2	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0016	3140	2	2	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0017	3140	2	2	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0018	3140	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0019	3125	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0020	3140	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0021	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0022	3140	1	0	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0023	3140	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0024	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0025	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0026	3140	1	0	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0027	3140	1	0	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0028	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0029	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0030	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0031	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	t0032	3140	1	1	0	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LAT2_chr7_74205006_74234834	1/1	t0001	1211	326	76	72	122	14	40	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0002	1211	9	9	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0003	1211	2	1	1	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0004	1211	2	0	0	2	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0005	1211	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0006	1211	1	0	1	0	0	0	copy fasta	LAT2	chr7	74205006	74234834