JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAT2_chr7_74205006_74234834	0/0	t0007	1211	1	0	0	0	0	1	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0008	1211	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	t0009	1211	1	0	0	0	0	1	copy fasta	LAT2	chr7	74205006	74234834
LATS1_chr6_149653153_149723101	0/1	t0001	3971	73	11	13	35	6	7	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	1/0	t0002	3970	69	8	10	39	4	7	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0003	3970	28	18	1	3	1	5	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0004	3971	27	0	4	20	0	3	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0005	3973	11	11	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0006	3971	8	8	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0007	3970	8	8	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0008	3970	7	7	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0009	3970	7	0	2	0	1	4	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0010	3970	5	1	4	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0011	3971	3	1	2	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0012	3971	3	3	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0013	3971	3	3	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0014	3970	2	1	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0015	3970	2	0	0	2	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0016	3973	2	2	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0017	3971	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0018	3970	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0019	3970	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0020	3970	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0021	3970	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0022	3970	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0023	3970	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0024	3970	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0025	3970	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0026	3971	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0027	3971	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0028	3970	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0029	3970	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	t0030	3973	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS2_chr13_20968036_21066586	0/1	t0001	2278	69	13	21	24	2	8	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0002	2277	53	10	13	21	2	7	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0003	2287	46	0	11	31	0	4	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	1/0	t0004	2280	22	7	3	10	1	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0005	2281	18	4	5	0	3	6	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0006	2288	9	0	0	8	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0007	2278	9	0	1	7	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0008	2280	8	8	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0009	2279	8	4	4	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0010	2279	8	3	1	3	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0011	2286	6	5	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0012	2286	5	0	1	4	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0013	2276	4	0	0	4	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0014	2283	3	3	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0015	2279	3	0	0	3	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0016	2278	3	3	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0017	2278	3	0	0	3	0	0	copy fasta	LATS2	chr13	20968036	21066586