Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APBA1_chr9_69422532_69677371	0/0	t0027	4080	1	0	0	0	0	1	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0028	4086	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0029	4086	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0030	4086	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0031	4080	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0032	4083	1	0	0	0	1	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0033	4080	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0034	4085	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0035	4086	1	0	1	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0036	4086	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	t0037	4084	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA2_chr15_28880974_29123315	0/0	t0001	1696	30	1	9	13	1	6	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/1	t0002	1696	28	6	3	12	0	6	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0003	1692	24	10	3	6	1	4	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	1/0	t0004	1692	21	5	5	9	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0005	1692	13	1	1	10	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0006	1696	13	13	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0007	1692	10	2	1	6	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0008	1696	8	7	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0009	1692	5	5	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0010	1696	4	3	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0011	1695	4	4	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0012	1696	3	3	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0013	1692	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0014	1696	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0015	1696	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0016	1696	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0017	1692	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0018	1699	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0019	1696	2	1	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0020	1696	2	1	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0021	1696	1	0	0	0	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0022	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0023	1696	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0024	1692	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0025	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0026	1692	1	0	0	0	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0027	1692	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0028	1696	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0029	1695	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0030	1696	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0031	1692	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0032	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0033	1696	1	0	0	0	0	1	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0034	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0035	1695	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0036	1704	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0037	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0038	1692	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0039	1696	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315