JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LATS2_chr13_20968036_21066586	0/0	t0018	2281	3	3	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0019	2284	2	2	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0020	2282	2	1	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0021	2280	2	0	0	0	0	2	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0022	2278	2	0	0	2	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0023	2285	2	1	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0024	2286	2	0	0	2	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0025	2282	2	1	0	0	1	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0026	2280	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0027	2277	1	0	1	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0028	2283	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0029	2288	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0030	2284	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0031	2280	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0032	2278	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0033	2280	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0034	2278	1	0	0	0	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0035	2287	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0036	2281	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0037	2278	1	0	0	0	1	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0038	2287	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0039	2287	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0040	2289	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0041	2281	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0042	2287	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0043	2277	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0044	2280	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0045	2281	1	0	0	0	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0046	2280	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	t0047	2279	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LAT_chr16_28980052_28995784	1/1	t0001	970	282	24	74	142	16	24	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0002	970	143	60	4	57	0	22	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0003	970	5	5	0	0	0	0	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0004	970	1	1	0	0	0	0	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0005	970	1	0	1	0	0	0	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0006	970	1	0	1	0	0	0	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	t0007	970	1	0	0	1	0	0	copy fasta	LAT	chr16	28980052	28995784
LAX1_chr1_203760183_203781372	0/0	t0001	2075	136	11	27	92	1	5	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0002	2069	84	18	7	47	1	11	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0003	2074	66	8	28	11	6	13	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0004	2076	18	0	1	15	0	2	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0005	2069	13	13	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0006	2070	11	5	0	4	2	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0007	2075	10	2	3	3	0	2	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	1/0	t0008	2075	10	9	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0009	2074	9	0	0	8	1	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/1	t0010	2066	8	0	3	0	2	2	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0011	2073	8	4	0	2	0	2	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0012	2074	8	8	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0013	2074	6	0	0	5	0	1	copy fasta	LAX1	chr1	203760183	203781372