JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LAX1_chr1_203760183_203781372	0/0	t0014	2075	4	0	0	4	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0015	2070	4	3	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0016	2075	4	4	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0017	2074	2	0	0	2	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0018	2076	2	1	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0019	2070	2	2	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0020	2075	2	0	0	2	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0021	2075	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0022	2075	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0023	2075	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0024	2074	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0025	2075	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0026	2074	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0027	2074	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0028	2075	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0029	2069	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0030	2075	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0031	2075	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0032	2074	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0033	2073	1	0	0	0	1	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0034	2074	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	t0035	2075	1	0	0	1	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAYN_chr11_111535720_111566745	0/1	t0001	1409	175	25	49	71	5	24	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0002	1409	63	30	14	8	5	6	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0003	1409	16	16	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	1/0	t0004	1412	16	11	4	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0005	1409	8	0	2	0	0	6	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0006	1409	7	0	0	7	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0007	1409	4	1	2	1	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0008	1409	2	2	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0009	1409	2	2	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0010	1409	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0011	1409	1	0	1	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0012	1409	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0013	1409	1	0	0	1	0	0	copy fasta	LAYN	chr11	111535720	111566745
LAYN_chr11_111535720_111566745	0/0	t0014	1409	1	1	0	0	0	0	copy fasta	LAYN	chr11	111535720	111566745
LBHD1_chr11_62657817_62677267	0/1	t0001	1027	137	19	18	89	2	8	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0002	1027	100	5	33	32	9	21	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	1/0	t0003	1027	88	41	22	13	2	9	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0004	1021	29	24	4	0	1	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0005	1027	3	3	0	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0006	1027	1	0	1	0	0	0	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0007	1027	1	0	0	0	0	1	copy fasta	LBHD1	chr11	62657817	62677267
LBHD1_chr11_62657817_62677267	0/0	t0008	1027	1	0	0	0	0	1	copy fasta	LBHD1	chr11	62657817	62677267
LBHD2_chr14_103079210_103095027	1/1	t0001	406	394	73	76	182	16	45	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0002	406	16	13	1	0	0	2	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0003	406	6	0	3	0	0	3	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0004	406	4	0	0	4	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0005	406	3	3	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0006	406	3	2	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027